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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12521 and 12522 are separated by 399 nucleotides
12522 and 12523 are separated by 270 nucleotides
12523 and 12524 are separated by 161 nucleotides
12524 and 12525 are separated by 236 nucleotides
mRNA_4153: 12521 - K20347 TMED2, EMP24 p24 family protein beta-1, at 1,481,592 to 1,482,556
12521
mRNA_4154: 12522 - K17402 MRPS23 small subunit ribosomal protein S23, at 1,482,956 to 1,484,034
12522
mRNA_4155: 12523 - K12492 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1, at 1,484,305 to 1,486,151
12523
mRNA_4156: 12524 - KOG1242 Protein containing adaptin N-terminal region, at 1,486,313 to 1,494,426
12524
mRNA_4157: 12525 - KOG2823 Cellular protein (glioma tumor suppressor candidate region gene 2), at 1,494,663 to 1,496,087
12525
Group
Condition
mRNA
_4153
mRNA
_4154
mRNA
_4155
mRNA
_4156
mRNA
_4157
12521
12522
12523
12524
12525
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
N.D.
-0.5
-0.6
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.6
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.3
-0.8
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
-0.2
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
N.D.
+0.1
-1.7
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.3
N.D.
+0.3
+0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
N.D.
+0.0
-1.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
+0.3
-1.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.2
-0.1
N.D.
auxotrophy
YNB Glucose
+0.3
N.D.
+0.3
-0.9
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
-0.4
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.4
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
+0.0
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.5
N.D.
+0.3
-0.8
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
+0.1
-0.5
N.D.
growth on ypd
YPD
+0.2
N.D.
-0.1
-0.0
N.D.
auxotrophy
Dropout Complete
+0.7
N.D.
-0.0
-0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+1.0
N.D.
-0.4
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.3
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.9
N.D.
+0.1
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
N.D.
+0.3
+0.9
N.D.
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