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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12533 and 12534 are separated by 398 nucleotides
12534 and 12535 are separated by 516 nucleotides
12535 and 12536 are separated by 411 nucleotides
12536 and 12537 are separated by 647 nucleotides
mRNA_4165: 12533 - Hypothetical Protein, at 1,513,991 to 1,515,479
12533
mRNA_4166: 12534 - K12597 AIR1_2 protein AIR1/2, at 1,515,878 to 1,517,607
12534
mRNA_4167: 12535 - Hypothetical Protein, at 1,518,124 to 1,518,875
12535
mRNA_4168: 12536 - K09487 HSP90B, TRA1 heat shock protein 90kDa beta, at 1,519,287 to 1,521,954
12536
mRNA_4169: 12537 - K13299 GSTK1 glutathione S-transferase kappa 1, at 1,522,602 to 1,523,728
12537
Group
Condition
mRNA
_4165
mRNA
_4166
mRNA
_4167
mRNA
_4168
mRNA
_4169
12533
12534
12535
12536
12537
growth on oleic acid
YNB Glucose
-0.1
-0.0
+0.0
-0.0
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.6
-0.3
-0.1
+0.2
growth on ypd
YPD
+0.2
-0.4
-0.2
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.5
-0.1
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.2
-0.3
+0.0
+0.1
auxotrophy
Dropout Complete
-0.0
+0.0
-0.4
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.6
-0.1
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.1
-0.3
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
-0.3
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
-0.2
-0.0
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.2
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.0
+0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.5
-0.4
+0.0
+0.7
auxotrophy
YNB Glucose
+0.1
+0.2
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.0
+0.1
+0.0
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
-0.0
+0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.3
-0.0
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.2
-0.0
+0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.1
+0.2
+0.3
-0.4
growth on oleic acid
YNB Oleic Acid
+0.3
+0.2
+0.4
+0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
+0.3
+0.0
+0.1
-0.1
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