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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12535 and 12536 are separated by 411 nucleotides
12536 and 12537 are separated by 647 nucleotides
12537 and 12538 are separated by 1245 nucleotides
12538 and 12539 are separated by 933 nucleotides
mRNA_4167: 12535 - Hypothetical Protein, at 1,518,124 to 1,518,875
12535
mRNA_4168: 12536 - K09487 HSP90B, TRA1 heat shock protein 90kDa beta, at 1,519,287 to 1,521,954
12536
mRNA_4169: 12537 - K13299 GSTK1 glutathione S-transferase kappa 1, at 1,522,602 to 1,523,728
12537
mRNA_4170: 12538 - KOG1256 Long-chain acyl-CoA synthetases (AMP-forming), at 1,524,974 to 1,527,080
12538
mRNA_4171: 12539 - KOG2806 Chitinase, at 1,528,014 to 1,529,581
12539
Group
Condition
mRNA
_4167
mRNA
_4168
mRNA
_4169
mRNA
_4170
mRNA
_4171
12535
12536
12537
12538
12539
growth on oleic acid
YNB Glucose
+0.0
-0.0
-0.7
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.0
-0.2
+0.1
-0.5
auxotrophy
Dropout Complete
-0.4
+0.1
-0.0
+0.0
-0.5
auxotrophy
YNB Glucose
-0.1
+0.1
-0.1
+0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
-0.3
+0.1
-0.4
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
-0.1
+0.0
-0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
-0.3
+0.0
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
+0.2
-0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.4
-0.3
-0.0
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.1
-0.1
-0.3
-0.2
growth on ypd
YPD
-0.2
+0.3
-0.4
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.1
-0.1
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
-0.3
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.3
+0.1
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.0
+0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.3
-0.4
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.0
+0.3
-0.2
+0.4
growth on oleic acid
YNB Oleic Acid
+0.4
+0.2
-0.2
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.0
+0.1
+0.1
+0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
+0.3
-0.0
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.0
+0.7
+0.0
+0.7
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