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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12539 and 12540 are separated by 561 nucleotides
12540 and 12541 are separated by 1700 nucleotides
12541 and 12542 are separated by 1110 nucleotides
12542 and 12543 are separated by 486 nucleotides
mRNA_4171: 12539 - KOG2806 Chitinase, at 1,528,014 to 1,529,581
12539
mRNA_4172: 12540 - KOG1212 Amidases, at 1,530,143 to 1,531,631
12540
mRNA_4173: 12541 - KOG2348 Urea transporter, at 1,533,332 to 1,534,654
12541
mRNA_4174: 12542 - KOG4305 RhoGEF GTPase, at 1,535,765 to 1,540,719
12542
mRNA_4175: 12543 - K03939 NDUFS6 NADH dehydrogenase (ubiquinone) Fe-S protein 6, at 1,541,206 to 1,541,936
12543
Group
Condition
mRNA
_4171
mRNA
_4172
mRNA
_4173
mRNA
_4174
mRNA
_4175
12539
12540
12541
12542
12543
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
N.D.
-0.4
-1.1
-2.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
-0.2
-0.6
-2.9
growth on ricinoleic acid
YNB Glucose
-0.6
N.D.
-0.3
-0.6
-1.0
ypd buoyancy
40 hrs Low Buoyancy
-0.5
N.D.
-0.1
-0.1
-1.3
auxotrophy
YNB Glucose
-0.6
N.D.
-0.4
-0.5
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.5
N.D.
-0.6
-0.2
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.7
+0.1
-0.8
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.5
-0.4
-0.3
auxotrophy
Dropout Complete
-0.5
N.D.
-0.4
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.2
-0.2
-1.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
N.D.
-0.7
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.1
+0.1
-0.3
growth on ypd
YPD
-0.2
N.D.
+0.1
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.0
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
N.D.
-0.2
-0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
+0.3
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.5
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
N.D.
-0.0
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
+0.0
+0.2
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
N.D.
-0.0
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
N.D.
+0.4
-0.3
+0.7
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