Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12541 and 12542 are separated by 1110 nucleotides12542 and 12543 are separated by 486 nucleotides12543 and 12544 are separated by 104 nucleotides12544 and 12545 are separated by 272 nucleotides mRNA_4173: 12541 - KOG2348 Urea transporter, at 1,533,332 to 1,534,654 12541 mRNA_4174: 12542 - KOG4305 RhoGEF GTPase, at 1,535,765 to 1,540,719 12542 mRNA_4175: 12543 - K03939 NDUFS6 NADH dehydrogenase (ubiquinone) Fe-S protein 6, at 1,541,206 to 1,541,936 12543 mRNA_4176: 12544 - KOG4093 Uncharacterized conserved protein, at 1,542,041 to 1,542,823 12544 mRNA_4177: 12545 - K15356 VRG4, GONST1 GDP-mannose transporter, at 1,543,096 to 1,544,844 12545
Group Condition mRNA_4173 mRNA_4174 mRNA_4175 mRNA_4176 mRNA_4177
12541 12542 12543 12544 12545
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 -1.1 -2.8 N.D. N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -0.6 -2.9 N.D. N.D.
growth on ricinoleic acid YNB Glucose -0.3 -0.6 -1.0 N.D. N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.1 -1.3 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 -0.2 -1.3 N.D. N.D.
growth on oleic acid YNB Oleic Acid -0.7 +0.1 -0.8 N.D. N.D.
growth on oleic acid YNB Glucose -0.5 -0.4 -0.3 N.D. N.D.
auxotrophy YNB Glucose -0.4 -0.5 -0.3 N.D. N.D.
auxotrophy YNB Glucose 75mM Arginine -0.6 -0.2 -0.2 N.D. N.D.
auxotrophy YNB Glucose 75mM Methionine -0.7 -0.2 +0.0 N.D. N.D.
auxotrophy Dropout Complete -0.4 -0.0 -0.3 N.D. N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.4 -0.1 N.D. N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 +0.1 -0.3 N.D. N.D.
growth on ypd YPD +0.1 -0.3 -0.1 N.D. N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 -0.1 +0.0 N.D. N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.0 -0.2 +0.1 N.D. N.D.
ypd buoyancy 40 hrs High Buoyancy +0.0 +0.2 -0.1 N.D. N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.3 -0.0 N.D. N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.5 +0.1 -0.1 N.D. N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +0.4 -0.3 +0.7 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 +0.2 +0.6 N.D. N.D.
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