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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12541 and 12542 are separated by 1110 nucleotides
12542 and 12543 are separated by 486 nucleotides
12543 and 12544 are separated by 104 nucleotides
12544 and 12545 are separated by 272 nucleotides
mRNA_4173: 12541 - KOG2348 Urea transporter, at 1,533,332 to 1,534,654
12541
mRNA_4174: 12542 - KOG4305 RhoGEF GTPase, at 1,535,765 to 1,540,719
12542
mRNA_4175: 12543 - K03939 NDUFS6 NADH dehydrogenase (ubiquinone) Fe-S protein 6, at 1,541,206 to 1,541,936
12543
mRNA_4176: 12544 - KOG4093 Uncharacterized conserved protein, at 1,542,041 to 1,542,823
12544
mRNA_4177: 12545 - K15356 VRG4, GONST1 GDP-mannose transporter, at 1,543,096 to 1,544,844
12545
Group
Condition
mRNA
_4173
mRNA
_4174
mRNA
_4175
mRNA
_4176
mRNA
_4177
12541
12542
12543
12544
12545
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-1.1
-2.8
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.6
-2.9
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.6
-1.0
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-1.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
-1.3
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.7
+0.1
-0.8
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.5
-0.4
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose
-0.4
-0.5
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.6
-0.2
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.7
-0.2
+0.0
N.D.
N.D.
auxotrophy
Dropout Complete
-0.4
-0.0
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.4
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.3
N.D.
N.D.
growth on ypd
YPD
+0.1
-0.3
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.2
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.1
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.3
+0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
+0.6
N.D.
N.D.
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