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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12551 and 12552 are separated by 527 nucleotides
12552 and 12553 are separated by 845 nucleotides
12553 and 12554 are separated by 558 nucleotides
12554 and 12555 are separated by 334 nucleotides
mRNA_4183: 12551 - K01497 ribA, RIB1 GTP cyclohydrolase II, at 1,555,526 to 1,557,851
12551
mRNA_4184: 12552 - K20989 DUR3 urea-proton symporter, at 1,558,379 to 1,561,248
12552
mRNA_4185: 12553 - KOG1212 Amidases, at 1,562,094 to 1,563,941
12553
mRNA_4186: 12554 - KOG2806 Chitinase, at 1,564,500 to 1,566,078
12554
mRNA_4187: 12555 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 1,566,413 to 1,568,898
12555
Group
Condition
mRNA
_4183
mRNA
_4184
mRNA
_4185
mRNA
_4186
mRNA
_4187
12551
12552
12553
12554
12555
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
+0.2
-0.9
-1.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.0
-1.8
-0.3
growth on oleic acid
YNB Glucose
N.D.
-0.3
-0.0
-0.4
-1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.2
-1.1
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+0.0
-1.4
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.2
+0.4
-0.6
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
+0.3
-0.9
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.4
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.3
-0.6
-0.4
auxotrophy
Dropout Complete
N.D.
-0.3
-0.2
+0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.0
+0.3
-1.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
-0.3
+0.5
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
-0.1
+0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.0
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.7
+0.4
-0.5
+0.8
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
+0.4
+0.2
-0.2
auxotrophy
YNB Glucose
N.D.
-0.0
+0.1
+0.6
-0.3
growth on ypd
YPD
N.D.
-0.2
+0.0
+1.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.2
-0.1
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.3
+0.2
+0.3
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