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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12553 and 12554 are separated by 558 nucleotides
12554 and 12555 are separated by 334 nucleotides
12555 and 12556 are separated by 167 nucleotides
12556 and 12557 are separated by 411 nucleotides
mRNA_4185: 12553 - KOG1212 Amidases, at 1,562,094 to 1,563,941
12553
mRNA_4186: 12554 - KOG2806 Chitinase, at 1,564,500 to 1,566,078
12554
mRNA_4187: 12555 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 1,566,413 to 1,568,898
12555
mRNA_4188: 12556 - KOG4372 Predicted alpha/beta hydrolase, at 1,569,066 to 1,571,020
12556
mRNA_4189: 12557 - Hypothetical Protein, at 1,571,432 to 1,574,972
12557
Group
Condition
mRNA
_4185
mRNA
_4186
mRNA
_4187
mRNA
_4188
mRNA
_4189
12553
12554
12555
12556
12557
growth on oleic acid
YNB Oleic Acid
+0.2
-0.9
-1.5
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-1.4
-0.0
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-1.8
-0.3
+0.3
N.D.
growth on oleic acid
YNB Glucose
-0.0
-0.4
-1.1
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.1
-0.5
-0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-1.1
-0.7
+0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.6
-0.8
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.6
-0.4
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
+0.0
-0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-1.0
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.9
-0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.5
-0.6
-0.1
N.D.
auxotrophy
Dropout Complete
-0.2
+0.3
-0.4
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.0
-0.4
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.4
-0.4
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.5
+0.8
-0.8
N.D.
auxotrophy
YNB Glucose
+0.1
+0.6
-0.3
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
+0.4
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
+0.2
-0.2
-0.1
N.D.
growth on ypd
YPD
+0.0
+1.2
-0.4
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.2
+0.3
+0.1
N.D.
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