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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12555 and 12556 are separated by 167 nucleotides
12556 and 12557 are separated by 411 nucleotides
12557 and 12558 are separated by 68 nucleotides
12558 and 12559 are separated by 1045 nucleotides
mRNA_4187: 12555 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 1,566,413 to 1,568,898
12555
mRNA_4188: 12556 - KOG4372 Predicted alpha/beta hydrolase, at 1,569,066 to 1,571,020
12556
mRNA_4189: 12557 - Hypothetical Protein, at 1,571,432 to 1,574,972
12557
mRNA_4190: 12558 - Hypothetical Protein, at 1,575,041 to 1,575,964
12558
mRNA_4191: 12559 - HMMPfam-GAF domain-PF13492,SMART-Domain present in phytochromes and cGMP-specific phosphodiesterases.-SM00065,SUPERFAMILY--SSF55781, at 1,577,010 to 1,579,239
12559
Group
Condition
mRNA
_4187
mRNA
_4188
mRNA
_4189
mRNA
_4190
mRNA
_4191
12555
12556
12557
12558
12559
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.8
N.D.
-1.2
-0.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.4
N.D.
-0.7
-0.1
growth on oleic acid
YNB Oleic Acid
-1.5
-0.1
N.D.
+0.5
-0.1
growth on oleic acid
YNB Glucose
-1.1
-0.4
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
+0.2
N.D.
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
N.D.
-1.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.5
N.D.
-0.1
-0.5
growth on ypd
YPD
-0.4
-0.2
N.D.
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
N.D.
-0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.3
N.D.
-1.1
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.7
N.D.
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.3
N.D.
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.1
N.D.
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.4
N.D.
+0.4
+0.5
auxotrophy
YNB Glucose
-0.3
-0.3
N.D.
+0.6
+0.0
auxotrophy
Dropout Complete
-0.4
-0.2
N.D.
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.2
N.D.
+0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
N.D.
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.6
-0.1
N.D.
+1.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.1
N.D.
+0.8
+0.0
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