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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12556 and 12557 are separated by 411 nucleotides
12557 and 12558 are separated by 68 nucleotides
12558 and 12559 are separated by 1045 nucleotides
12559 and 12560 are separated by 208 nucleotides
mRNA_4188: 12556 - KOG4372 Predicted alpha/beta hydrolase, at 1,569,066 to 1,571,020
12556
mRNA_4189: 12557 - Hypothetical Protein, at 1,571,432 to 1,574,972
12557
mRNA_4190: 12558 - Hypothetical Protein, at 1,575,041 to 1,575,964
12558
mRNA_4191: 12559 - HMMPfam-GAF domain-PF13492,SMART-Domain present in phytochromes and cGMP-specific phosphodiesterases.-SM00065,SUPERFAMILY--SSF55781, at 1,577,010 to 1,579,239
12559
mRNA_4192: 12560 - K04797 pfdA, PFDN5 prefoldin alpha subunit, at 1,579,448 to 1,580,118
12560
Group
Condition
mRNA
_4188
mRNA
_4189
mRNA
_4190
mRNA
_4191
mRNA
_4192
12556
12557
12558
12559
12560
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
-0.7
-0.1
-2.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
N.D.
-1.2
-0.9
+0.9
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.2
-0.2
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-1.0
+0.2
-0.2
auxotrophy
YNB Glucose
-0.3
N.D.
+0.6
+0.0
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
-1.1
+0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.7
N.D.
+0.3
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.2
-0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
N.D.
-0.1
-0.5
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.5
-0.1
-0.2
growth on oleic acid
YNB Glucose
-0.4
N.D.
+0.1
+0.2
+0.3
growth on ypd
YPD
-0.2
N.D.
-0.3
+0.3
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
+0.4
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
N.D.
+0.4
+0.5
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.0
-0.0
+0.3
auxotrophy
Dropout Complete
-0.2
N.D.
+0.2
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+1.0
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.3
+0.0
+1.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.8
+0.0
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
-0.2
-0.2
+2.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.1
+0.0
+2.3
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