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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12558 and 12559 are separated by 1045 nucleotides
12559 and 12560 are separated by 208 nucleotides
12560 and 12561 are separated by 309 nucleotides
12561 and 12562 are separated by 246 nucleotides
mRNA_4190: 12558 - Hypothetical Protein, at 1,575,041 to 1,575,964
12558
mRNA_4191: 12559 - HMMPfam-GAF domain-PF13492,SMART-Domain present in phytochromes and cGMP-specific phosphodiesterases.-SM00065,SUPERFAMILY--SSF55781, at 1,577,010 to 1,579,239
12559
mRNA_4192: 12560 - K04797 pfdA, PFDN5 prefoldin alpha subunit, at 1,579,448 to 1,580,118
12560
mRNA_4193: 12561 - Hypothetical Protein, at 1,580,428 to 1,584,449
12561
mRNA_4194: 12562 - K01934 MTHFS 5-formyltetrahydrofolate cyclo-ligase, at 1,584,696 to 1,585,623
12562
Group
Condition
mRNA
_4190
mRNA
_4191
mRNA
_4192
mRNA
_4193
mRNA
_4194
12558
12559
12560
12561
12562
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.1
-2.0
-0.0
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
-0.9
+0.9
+0.5
-1.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
-0.9
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.5
-0.3
-0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
+0.5
-0.2
+0.5
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.2
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
+0.2
-0.2
+0.2
+0.2
auxotrophy
YNB Glucose
+0.6
+0.0
-0.9
-0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.2
+0.2
-0.1
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
+0.3
+0.1
-0.5
growth on oleic acid
YNB Oleic Acid
+0.5
-0.1
-0.2
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.5
-0.2
+0.1
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.2
+0.3
-0.1
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.2
+0.3
-0.1
-0.2
auxotrophy
Dropout Complete
+0.2
+0.3
+0.3
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+1.0
+0.1
+0.2
+0.1
-0.3
growth on ypd
YPD
-0.3
+0.3
+0.5
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.0
+1.2
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
+0.0
+0.9
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.2
+2.1
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+2.3
+0.0
+0.5
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