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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12559 and 12560 are separated by 208 nucleotides
12560 and 12561 are separated by 309 nucleotides
12561 and 12562 are separated by 246 nucleotides
12562 and 12563 are separated by 172 nucleotides
mRNA_4191: 12559 - HMMPfam-GAF domain-PF13492,SMART-Domain present in phytochromes and cGMP-specific phosphodiesterases.-SM00065,SUPERFAMILY--SSF55781, at 1,577,010 to 1,579,239
12559
mRNA_4192: 12560 - K04797 pfdA, PFDN5 prefoldin alpha subunit, at 1,579,448 to 1,580,118
12560
mRNA_4193: 12561 - Hypothetical Protein, at 1,580,428 to 1,584,449
12561
mRNA_4194: 12562 - K01934 MTHFS 5-formyltetrahydrofolate cyclo-ligase, at 1,584,696 to 1,585,623
12562
mRNA_4195: 12563 - HMMPfam-Protein of unknown function (DUF2962)-PF11176, at 1,585,796 to 1,586,681
12563
Group
Condition
mRNA
_4191
mRNA
_4192
mRNA
_4193
mRNA
_4194
mRNA
_4195
12559
12560
12561
12562
12563
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-2.0
-0.0
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-0.9
-0.1
-0.0
N.D.
auxotrophy
YNB Glucose
+0.0
-0.9
-0.0
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.3
-0.2
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
-0.1
-0.6
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.9
+0.5
-1.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
-0.1
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.2
+0.1
-0.6
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.3
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.3
+0.1
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
+0.1
-0.3
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.3
-0.1
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.2
+0.5
-0.6
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
+0.2
+0.2
N.D.
auxotrophy
Dropout Complete
+0.3
+0.3
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.9
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+1.2
+0.1
+0.1
N.D.
growth on ypd
YPD
+0.3
+0.5
+0.1
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+2.1
+0.0
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+2.3
+0.0
+0.5
N.D.
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