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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12560 and 12561 are separated by 309 nucleotides
12561 and 12562 are separated by 246 nucleotides
12562 and 12563 are separated by 172 nucleotides
12563 and 12564 are separated by 156 nucleotides
mRNA_4192: 12560 - K04797 pfdA, PFDN5 prefoldin alpha subunit, at 1,579,448 to 1,580,118
12560
mRNA_4193: 12561 - Hypothetical Protein, at 1,580,428 to 1,584,449
12561
mRNA_4194: 12562 - K01934 MTHFS 5-formyltetrahydrofolate cyclo-ligase, at 1,584,696 to 1,585,623
12562
mRNA_4195: 12563 - HMMPfam-Protein of unknown function (DUF2962)-PF11176, at 1,585,796 to 1,586,681
12563
mRNA_4196: 12564 - K12343 SRD5A1 3-oxo-5-alpha-steroid 4-dehydrogenase 1, at 1,586,838 to 1,587,953
12564
Group
Condition
mRNA
_4192
mRNA
_4193
mRNA
_4194
mRNA
_4195
mRNA
_4196
12560
12561
12562
12563
12564
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.0
-0.0
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose
-0.9
-0.0
-0.3
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
-0.6
N.D.
-0.5
growth on ricinoleic acid
YNB Glucose
-0.9
-0.1
-0.0
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-0.6
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.2
+0.0
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
-0.3
N.D.
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.5
-0.6
N.D.
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
+0.5
-1.1
N.D.
-0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
-0.5
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
+0.2
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.1
-0.1
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.3
-0.1
-0.2
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
-0.2
N.D.
+0.6
auxotrophy
Dropout Complete
+0.3
-0.1
-0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.2
+0.1
+0.1
N.D.
-0.2
growth on ypd
YPD
+0.5
+0.1
+0.5
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
+0.2
+0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+2.1
+0.0
+0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+2.3
+0.0
+0.5
N.D.
-0.2
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