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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12567 and 12568 are separated by 501 nucleotides
12568 and 12569 are separated by 405 nucleotides
12569 and 12570 are separated by 393 nucleotides
12570 and 12571 are separated by 2100 nucleotides
mRNA_4199: 12567 - KOG1303 Amino acid transporters, at 1,592,651 to 1,594,788
12567
mRNA_4200: 12568 - Hypothetical Protein, at 1,595,290 to 1,595,787
12568
mRNA_4201: 12569 - K02913 RP-L33, MRPL33, rpmG large subunit ribosomal protein L33, at 1,596,193 to 1,596,692
12569
mRNA_4202: 12570 - K00249 ACADM, acd acyl-CoA dehydrogenase, at 1,597,086 to 1,599,409
12570
mRNA_4203: 12571 - K19842 ROM1_2 RHO1 GDP-GTP exchange protein 1/2, at 1,601,510 to 1,605,241
12571
Group
Condition
mRNA
_4199
mRNA
_4200
mRNA
_4201
mRNA
_4202
mRNA
_4203
12567
12568
12569
12570
12571
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.0
N.D.
-0.9
-3.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.2
N.D.
-0.9
-3.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
N.D.
-0.2
-2.7
auxotrophy
YNB Glucose
-0.1
+0.1
N.D.
+0.0
-1.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.0
N.D.
-0.1
-0.9
growth on oleic acid
YNB Glucose
-0.3
+0.3
N.D.
-0.2
-0.8
auxotrophy
Dropout Complete
-0.1
+0.1
N.D.
-0.0
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.4
N.D.
+0.1
-0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
N.D.
-0.0
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.4
N.D.
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
N.D.
-0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
N.D.
-0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
N.D.
+0.4
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.3
N.D.
+0.0
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
N.D.
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
N.D.
+0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.2
N.D.
-0.0
+0.1
growth on ypd
YPD
+0.0
-0.0
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
N.D.
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
N.D.
+0.0
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
N.D.
+0.1
+0.4
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