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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12570 and 12571 are separated by 2100 nucleotides
12571 and 12572 are separated by 256 nucleotides
12572 and 12573 are separated by 677 nucleotides
12573 and 12574 are separated by 75 nucleotides
mRNA_4202: 12570 - K00249 ACADM, acd acyl-CoA dehydrogenase, at 1,597,086 to 1,599,409
12570
mRNA_4203: 12571 - K19842 ROM1_2 RHO1 GDP-GTP exchange protein 1/2, at 1,601,510 to 1,605,241
12571
mRNA_4204: 12572 - K15292 STXBP1, MUNC18-1 syntaxin-binding protein 1, at 1,605,498 to 1,608,617
12572
mRNA_4205: 12573 - K09276 YBX1, NSEP1 Y-box-binding protein 1, at 1,609,295 to 1,611,072
12573
mRNA_4206: 12574 - Hypothetical Protein, at 1,611,148 to 1,611,771
12574
Group
Condition
mRNA
_4202
mRNA
_4203
mRNA
_4204
mRNA
_4205
mRNA
_4206
12570
12571
12572
12573
12574
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-3.3
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-3.2
N.D.
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-2.7
N.D.
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.9
N.D.
-0.5
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.7
N.D.
-0.3
-0.1
growth on oleic acid
YNB Glucose
-0.2
-0.8
N.D.
+0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.1
N.D.
+0.0
-0.2
auxotrophy
YNB Glucose
+0.0
-1.4
N.D.
+0.9
+0.1
growth on oleic acid
YNB Oleic Acid
-0.4
-0.2
N.D.
+0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.5
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.3
N.D.
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.4
N.D.
-0.0
+0.2
auxotrophy
Dropout Complete
-0.0
-0.7
N.D.
+0.7
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.1
N.D.
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.5
N.D.
+0.5
+0.1
growth on ypd
YPD
+0.1
+0.1
N.D.
-0.5
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.7
N.D.
+0.6
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.1
N.D.
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.4
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.0
N.D.
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.6
N.D.
-0.1
+0.4
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