Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
12575 and 12576 are separated by 404 nucleotides
12576 and 12577 are separated by 184 nucleotides
12577 and 12578 are separated by 392 nucleotides
12578 and 12579 are separated by 180 nucleotides
mRNA_4207: 12575 - BLAST similar to An07g08470 [Aspergillus kawachii IFO 4308], at 1,611,743 to 1,613,207
12575
mRNA_4208: 12576 - K17919 SNX4 sorting nexin-4, at 1,613,612 to 1,615,514
12576
mRNA_4209: 12577 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,615,699 to 1,618,403
12577
mRNA_4210: 12578 - K19985 EXOC6, SEC15 exocyst complex component 6, at 1,618,796 to 1,621,938
12578
mRNA_4211: 12579 - Hypothetical Protein, at 1,622,119 to 1,623,170
12579
Group
Condition
mRNA
_4207
mRNA
_4208
mRNA
_4209
mRNA
_4210
mRNA
_4211
12575
12576
12577
12578
12579
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-1.8
-0.1
-0.7
-1.3
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.2
+0.1
-0.3
-2.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.2
-0.1
-1.2
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.4
+0.1
-0.3
-1.8
auxotrophy
Dropout Complete
-0.6
-0.3
+0.7
-0.1
-1.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.5
-0.0
-0.8
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-1.0
+0.5
-0.2
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.7
+0.3
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.8
+0.2
-0.8
+0.3
auxotrophy
YNB Glucose
-0.0
-0.6
+0.5
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
+0.1
-0.7
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.1
+0.0
+0.4
-1.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
+0.1
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.4
+0.1
-0.5
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.4
+0.5
-0.4
-0.3
growth on oleic acid
YNB Glucose
+0.0
-0.2
+0.2
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.3
+0.0
-0.0
-0.9
growth on oleic acid
YNB Oleic Acid
+0.2
-0.0
+0.2
-0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.0
-0.1
-0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
+0.2
+0.1
-0.4
growth on ypd
YPD
-0.0
+0.2
+0.2
-0.2
+0.1
remove
mRNA_4207
plot
remove
mRNA_4208
plot
remove
mRNA_4209
remove
mRNA_4210
plot
remove
mRNA_4211
plot