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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12576 and 12577 are separated by 184 nucleotides
12577 and 12578 are separated by 392 nucleotides
12578 and 12579 are separated by 180 nucleotides
12579 and 12580 are separated by 285 nucleotides
mRNA_4208: 12576 - K17919 SNX4 sorting nexin-4, at 1,613,612 to 1,615,514
12576
mRNA_4209: 12577 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,615,699 to 1,618,403
12577
mRNA_4210: 12578 - K19985 EXOC6, SEC15 exocyst complex component 6, at 1,618,796 to 1,621,938
12578
mRNA_4211: 12579 - Hypothetical Protein, at 1,622,119 to 1,623,170
12579
mRNA_4212: 12580 - KOG1968 Replication factor C, subunit RFC1 (large subunit), at 1,623,456 to 1,625,668
12580
Group
Condition
mRNA
_4208
mRNA
_4209
mRNA
_4210
mRNA
_4211
mRNA
_4212
12576
12577
12578
12579
12580
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.8
-0.1
-0.7
-1.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
-1.2
-0.8
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.3
-2.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
-0.3
-1.8
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-1.0
+0.5
-0.2
-0.7
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.0
-0.8
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.3
-0.2
-0.6
-0.1
auxotrophy
Dropout Complete
-0.3
+0.7
-0.1
-1.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
+0.2
-0.8
+0.3
+0.3
auxotrophy
YNB Glucose
-0.6
+0.5
-0.2
-0.6
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.5
-0.4
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
-0.7
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.1
-0.5
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
+0.0
-0.0
-0.9
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.0
+0.4
-1.1
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
+0.2
-0.5
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
-0.1
-0.5
+0.3
growth on oleic acid
YNB Glucose
-0.2
+0.2
-0.1
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-0.0
+0.2
-0.3
-0.3
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
+0.1
-0.4
+0.2
growth on ypd
YPD
+0.2
+0.2
-0.2
+0.1
+0.1
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