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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12577 and 12578 are separated by 392 nucleotides
12578 and 12579 are separated by 180 nucleotides
12579 and 12580 are separated by 285 nucleotides
12580 and 12581 are separated by 133 nucleotides
mRNA_4209: 12577 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,615,699 to 1,618,403
12577
mRNA_4210: 12578 - K19985 EXOC6, SEC15 exocyst complex component 6, at 1,618,796 to 1,621,938
12578
mRNA_4211: 12579 - Hypothetical Protein, at 1,622,119 to 1,623,170
12579
mRNA_4212: 12580 - KOG1968 Replication factor C, subunit RFC1 (large subunit), at 1,623,456 to 1,625,668
12580
mRNA_4213: 12581 - K01673 cynT, can carbonic anhydrase, at 1,625,802 to 1,627,146
12581
Group
Condition
mRNA
_4209
mRNA
_4210
mRNA
_4211
mRNA
_4212
mRNA
_4213
12577
12578
12579
12580
12581
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.3
-1.8
-0.4
-2.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.7
-1.3
-0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.4
-1.1
+0.5
-1.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
-0.5
+0.3
-1.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.7
-0.4
+0.2
-0.9
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
-2.1
+0.1
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.8
+0.1
-0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-1.2
-0.8
-0.0
+0.7
growth on ricinoleic acid
YNB Glucose
+0.0
-0.0
-0.9
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.8
+0.3
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
-0.6
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.5
+0.3
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
-0.3
+0.4
-0.1
growth on ypd
YPD
+0.2
-0.2
+0.1
+0.1
-0.1
auxotrophy
Dropout Complete
+0.7
-0.1
-1.4
+0.2
+0.9
growth on oleic acid
YNB Glucose
+0.2
-0.1
-0.2
+0.1
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
-0.4
+0.2
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
-0.5
+0.1
+0.7
auxotrophy
YNB Glucose
+0.5
-0.2
-0.6
+0.1
+1.5
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.4
-0.3
-0.0
+1.6
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.2
-0.7
-0.1
+2.1
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