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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12580 and 12581 are separated by 133 nucleotides
12581 and 12582 are separated by 457 nucleotides
12582 and 12583 are separated by 704 nucleotides
12583 and 12584 are separated by 148 nucleotides
mRNA_4212: 12580 - KOG1968 Replication factor C, subunit RFC1 (large subunit), at 1,623,456 to 1,625,668
12580
mRNA_4213: 12581 - K01673 cynT, can carbonic anhydrase, at 1,625,802 to 1,627,146
12581
mRNA_4214: 12582 - Hypothetical Protein, at 1,627,604 to 1,628,234
12582
mRNA_4215: 12583 - HMMPfam-RhoGAP domain-PF00620,ProSiteProfiles-Rho GTPase-activating proteins domain profile.-PS50238,SMART-Fes/CIP4 homology domain-SM00055,SMART-GTPase-activator protein for Rho-like GTPases-SM00324,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF48350, at 1,628,939 to 1,632,484
12583
mRNA_4216: 12584 - K13123 GPATCH1 G patch domain-containing protein 1, at 1,632,633 to 1,635,917
12584
Group
Condition
mRNA
_4212
mRNA
_4213
mRNA
_4214
mRNA
_4215
mRNA
_4216
12580
12581
12582
12583
12584
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-1.6
-0.3
-0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-2.3
+0.3
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.9
-0.7
+0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-1.7
+0.2
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
+0.2
-0.4
+0.1
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
-0.4
-0.0
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.5
+0.3
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.2
-0.3
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.4
-0.2
-0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
+0.4
+0.3
-0.5
auxotrophy
Dropout Complete
+0.2
+0.9
-0.4
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
+0.4
-0.1
+0.2
-0.1
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.4
-0.0
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.5
+0.2
+0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.5
+0.1
+0.1
-0.1
growth on ypd
YPD
+0.1
-0.1
+0.2
+0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.7
+0.3
+0.0
-0.3
auxotrophy
YNB Glucose
+0.1
+1.5
-0.3
-0.0
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+1.6
-0.1
-0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.7
+0.3
+0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+2.1
+0.0
-0.1
-0.2
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