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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12582 and 12583 are separated by 704 nucleotides
12583 and 12584 are separated by 148 nucleotides
12584 and 12585 are separated by 318 nucleotides
12585 and 12586 are separated by 517 nucleotides
mRNA_4214: 12582 - Hypothetical Protein, at 1,627,604 to 1,628,234
12582
mRNA_4215: 12583 - HMMPfam-RhoGAP domain-PF00620,ProSiteProfiles-Rho GTPase-activating proteins domain profile.-PS50238,SMART-Fes/CIP4 homology domain-SM00055,SMART-GTPase-activator protein for Rho-like GTPases-SM00324,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF48350, at 1,628,939 to 1,632,484
12583
mRNA_4216: 12584 - K13123 GPATCH1 G patch domain-containing protein 1, at 1,632,633 to 1,635,917
12584
mRNA_4217: 12585 - K14830 MAK11, PAK1IP1 protein MAK11, at 1,636,236 to 1,637,979
12585
mRNA_4218: 12586 - K17491 SMEK, PPP4R3 protein phosphatase 4 regulatory subunit 3, at 1,638,497 to 1,642,867
12586
Group
Condition
mRNA
_4214
mRNA
_4215
mRNA
_4216
mRNA
_4217
mRNA
_4218
12582
12583
12584
12585
12586
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
+0.1
-0.5
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.2
-0.4
N.D.
-0.2
auxotrophy
Dropout Complete
-0.4
-0.1
-0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.0
-0.0
N.D.
-0.3
auxotrophy
YNB Glucose
-0.3
-0.0
-0.4
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
-0.3
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
-0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.1
+0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.0
+0.1
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
-0.1
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.0
+0.0
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.1
-0.0
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.0
-0.4
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.1
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
-0.1
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.0
-0.3
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.4
+0.2
N.D.
-0.1
growth on ypd
YPD
+0.2
+0.0
+0.4
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.3
-0.5
N.D.
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
+0.4
N.D.
+0.1
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