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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12586 and 12587 are separated by 124 nucleotides
12587 and 12588 are separated by 231 nucleotides
12588 and 12589 are separated by 168 nucleotides
12589 and 12590 are separated by 68 nucleotides
mRNA_4218: 12586 - K17491 SMEK, PPP4R3 protein phosphatase 4 regulatory subunit 3, at 1,638,497 to 1,642,867
12586
mRNA_4219: 12587 - HMMPfam-Protein phosphatase inhibitor 2 (IPP-2)-PF04979, at 1,642,992 to 1,644,310
12587
mRNA_4220: 12588 - K19932 NCS1 neuronal calcium sensor 1, at 1,644,542 to 1,645,935
12588
mRNA_4221: 12589 - HMMPfam-Sodium/hydrogen exchanger family-PF00999, at 1,646,104 to 1,647,809
12589
mRNA_4222: 12590 - K17969 FIS1, TTC11, MDV2 mitochondrial fission 1 protein, at 1,647,878 to 1,648,825
12590
Group
Condition
mRNA
_4218
mRNA
_4219
mRNA
_4220
mRNA
_4221
mRNA
_4222
12586
12587
12588
12589
12590
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.3
-3.5
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-1.0
-0.0
-1.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.9
-0.8
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.3
-1.3
+0.3
-0.9
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
-0.7
-0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
-0.7
+0.2
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.6
+0.8
-0.4
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.2
-0.4
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.0
+0.1
+0.2
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
+0.3
-0.5
+0.3
-1.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.3
-0.3
+0.3
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
+0.2
-0.3
-0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.1
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.5
+0.7
+0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.2
+0.3
+0.2
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
+0.6
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.3
+0.2
+0.2
-0.0
growth on oleic acid
YNB Glucose
+0.1
+0.2
+0.3
-0.1
+0.0
auxotrophy
YNB Glucose
+0.2
+0.0
+0.3
+0.0
+0.3
auxotrophy
Dropout Complete
+0.1
+0.2
+0.7
-0.2
+0.3
growth on ypd
YPD
+0.1
+0.5
-0.2
+0.5
+0.1
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