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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12591 and 12592 are separated by 78 nucleotides
12592 and 12593 are separated by 355 nucleotides
12593 and 12594 are separated by 319 nucleotides
12594 and 12595 are separated by 207 nucleotides
mRNA_4223: 12591 - KOG3957 Predicted L-carnitine dehydratase/alpha-methylacyl-CoA racemase, at 1,648,878 to 1,650,600
12591
mRNA_4224: 12592 - Hypothetical Protein, at 1,650,679 to 1,653,904
12592
mRNA_4225: 12593 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 1,654,260 to 1,655,493
12593
mRNA_4226: 12594 - K00700 GBE1, glgB 1,4-alpha-glucan branching enzyme, at 1,655,813 to 1,659,134
12594
mRNA_4227: 12595 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF48452, at 1,659,342 to 1,664,294
12595
Group
Condition
mRNA
_4223
mRNA
_4224
mRNA
_4225
mRNA
_4226
mRNA
_4227
12591
12592
12593
12594
12595
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
-0.3
-3.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.0
-0.1
-3.3
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
+0.2
-1.8
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.3
-0.5
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.5
+0.1
-0.5
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
+0.1
-1.5
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.3
-0.2
-0.6
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
-0.2
-0.4
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.3
-0.2
-0.5
+0.0
growth on ypd
YPD
+0.4
-0.4
+0.2
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.0
-0.2
+0.0
+0.0
auxotrophy
Dropout Complete
-0.2
-0.3
+0.0
+0.4
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.2
+0.3
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
-0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.4
+0.5
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.3
+0.4
+0.2
+0.1
auxotrophy
YNB Glucose
-0.1
-0.1
-0.1
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
+0.3
-0.4
+0.1
growth on oleic acid
YNB Glucose
-0.1
-0.1
+0.4
+0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
+0.3
+0.5
+0.1
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