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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12593 and 12594 are separated by 319 nucleotides
12594 and 12595 are separated by 207 nucleotides
12595 and 12596 are separated by 54 nucleotides
12596 and 12597 are separated by 153 nucleotides
mRNA_4225: 12593 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 1,654,260 to 1,655,493
12593
mRNA_4226: 12594 - K00700 GBE1, glgB 1,4-alpha-glucan branching enzyme, at 1,655,813 to 1,659,134
12594
mRNA_4227: 12595 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF48452, at 1,659,342 to 1,664,294
12595
mRNA_4228: 12596 - K00995 pgsA, PGS1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,664,349 to 1,666,570
12596
mRNA_4229: 12597 - K03145 TFIIS transcription elongation factor S-II, at 1,666,724 to 1,668,318
12597
Group
Condition
mRNA
_4225
mRNA
_4226
mRNA
_4227
mRNA
_4228
mRNA
_4229
12593
12594
12595
12596
12597
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-3.2
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-3.3
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-1.8
-0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-1.5
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.6
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.1
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.5
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.4
-0.0
N.D.
N.D.
growth on ypd
YPD
+0.2
-0.5
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.5
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.0
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.4
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.1
+0.4
+0.0
N.D.
N.D.
auxotrophy
Dropout Complete
+0.0
+0.4
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.4
+0.2
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
+0.2
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.3
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.1
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.5
+0.1
N.D.
N.D.
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