Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 12593 and 12594 are separated by 319 nucleotides12594 and 12595 are separated by 207 nucleotides12595 and 12596 are separated by 54 nucleotides12596 and 12597 are separated by 153 nucleotides mRNA_4225: 12593 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 1,654,260 to 1,655,493 12593 mRNA_4226: 12594 - K00700 GBE1, glgB 1,4-alpha-glucan branching enzyme, at 1,655,813 to 1,659,134 12594 mRNA_4227: 12595 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF48452, at 1,659,342 to 1,664,294 12595 mRNA_4228: 12596 - K00995 pgsA, PGS1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,664,349 to 1,666,570 12596 mRNA_4229: 12597 - K03145 TFIIS transcription elongation factor S-II, at 1,666,724 to 1,668,318 12597
Group Condition mRNA_4225 mRNA_4226 mRNA_4227 mRNA_4228 mRNA_4229
12593 12594 12595 12596 12597
ypd buoyancy 40 hrs Low Buoyancy -0.3 -3.2 +0.2 N.D. N.D.
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 -3.3 +0.0 N.D. N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 -1.8 -0.1 N.D. N.D.
growth on oleic acid YNB Oleic Acid +0.1 -1.5 +0.0 N.D. N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 -0.6 -0.2 N.D. N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.5 -0.1 -0.1 N.D. N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.5 +0.0 N.D. N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.2 -0.4 -0.0 N.D. N.D.
growth on ypd YPD +0.2 -0.5 +0.0 N.D. N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.5 +0.1 N.D. N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 +0.0 +0.0 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 -0.4 +0.1 N.D. N.D.
auxotrophy YNB Glucose 75mM Arginine -0.1 +0.2 -0.1 N.D. N.D.
auxotrophy YNB Glucose -0.1 +0.4 +0.0 N.D. N.D.
auxotrophy Dropout Complete +0.0 +0.4 -0.0 N.D. N.D.
growth on oleic acid YNB Glucose +0.4 +0.2 -0.2 N.D. N.D.
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.1 +0.2 N.D. N.D.
growth on ricinoleic acid YNB Glucose +0.4 +0.2 +0.1 N.D. N.D.
auxotrophy YNB Glucose 75mM Methionine +0.3 +0.3 +0.1 N.D. N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.5 +0.1 +0.1 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.3 +0.5 +0.1 N.D. N.D.
remove
mRNA_4225
plot
remove
mRNA_4226
plot
remove
mRNA_4227
remove
mRNA_4228
plot
remove
mRNA_4229
plot