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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12600 and 12601 are separated by 152 nucleotides
12601 and 12602 are separated by 177 nucleotides
12602 and 12603 are separated by 439 nucleotides
12603 and 12604 are separated by 220 nucleotides
mRNA_4232: 12600 - K14832 MAK21, NOC1, CEBPZ ribosome biogenesis protein MAK21, at 1,673,939 to 1,677,855
12600
mRNA_4233: 12601 - K11096 SNRPD2, SMD2 small nuclear ribonucleoprotein D2, at 1,678,008 to 1,678,995
12601
mRNA_4234: 12602 - SUPERFAMILY--SSF56112, at 1,679,173 to 1,681,802
12602
mRNA_4235: 12603 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,682,242 to 1,685,142
12603
mRNA_4236: 12604 - HMMPfam-pinin/SDK/memA/ protein conserved region-PF04696, at 1,685,363 to 1,686,839
12604
Group
Condition
mRNA
_4232
mRNA
_4233
mRNA
_4234
mRNA
_4235
mRNA
_4236
12600
12601
12602
12603
12604
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
-0.2
-2.0
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
-0.2
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
+0.1
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.5
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.0
-0.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.4
+0.0
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.0
+0.5
-1.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.4
+0.1
-0.1
growth on ypd
YPD
N.D.
N.D.
-0.0
-0.0
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.2
+0.4
-0.7
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.2
-0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.0
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.3
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
+0.0
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.4
+0.0
+0.7
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.2
+0.1
+0.6
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
-0.2
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.3
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
+0.1
+1.0
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