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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12601 and 12602 are separated by 177 nucleotides
12602 and 12603 are separated by 439 nucleotides
12603 and 12604 are separated by 220 nucleotides
12604 and 12605 are separated by 674 nucleotides
mRNA_4233: 12601 - K11096 SNRPD2, SMD2 small nuclear ribonucleoprotein D2, at 1,678,008 to 1,678,995
12601
mRNA_4234: 12602 - SUPERFAMILY--SSF56112, at 1,679,173 to 1,681,802
12602
mRNA_4235: 12603 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,682,242 to 1,685,142
12603
mRNA_4236: 12604 - HMMPfam-pinin/SDK/memA/ protein conserved region-PF04696, at 1,685,363 to 1,686,839
12604
mRNA_4237: 12605 - K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1, at 1,687,514 to 1,688,995
12605
Group
Condition
mRNA
_4233
mRNA
_4234
mRNA
_4235
mRNA
_4236
mRNA
_4237
12601
12602
12603
12604
12605
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.1
-1.1
-1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
-0.2
-2.0
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
+0.5
-1.1
-1.0
auxotrophy
Dropout Complete
N.D.
-0.2
-0.2
-0.7
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
-0.0
-0.3
-0.0
growth on oleic acid
YNB Glucose
N.D.
-0.2
+0.1
+0.6
-1.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-0.2
+0.5
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.4
-0.7
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
+0.0
-0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.1
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
-0.0
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.0
-0.1
+0.3
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
+0.1
-0.1
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
+0.0
+0.3
+0.3
auxotrophy
YNB Glucose
N.D.
-0.2
-0.1
-0.2
+1.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.4
+0.0
+0.7
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
+0.4
+0.4
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.2
+0.3
+1.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
-0.1
-0.6
+2.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.1
+1.0
+0.5
growth on ypd
YPD
N.D.
-0.0
-0.0
-0.4
+2.2
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