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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12602 and 12603 are separated by 439 nucleotides
12603 and 12604 are separated by 220 nucleotides
12604 and 12605 are separated by 674 nucleotides
12605 and 12606 are separated by 553 nucleotides
mRNA_4234: 12602 - SUPERFAMILY--SSF56112, at 1,679,173 to 1,681,802
12602
mRNA_4235: 12603 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,682,242 to 1,685,142
12603
mRNA_4236: 12604 - HMMPfam-pinin/SDK/memA/ protein conserved region-PF04696, at 1,685,363 to 1,686,839
12604
mRNA_4237: 12605 - K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1, at 1,687,514 to 1,688,995
12605
mRNA_4238: 12606 - KOG1105 Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1, at 1,689,549 to 1,691,062
12606
Group
Condition
mRNA
_4234
mRNA
_4235
mRNA
_4236
mRNA
_4237
mRNA
_4238
12602
12603
12604
12605
12606
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
-1.1
-1.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.2
-2.0
+0.7
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.5
-1.1
-1.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.0
-0.3
-0.0
-0.2
auxotrophy
Dropout Complete
-0.2
-0.2
-0.7
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
+0.5
-1.1
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.0
-0.3
+0.3
-0.0
growth on oleic acid
YNB Glucose
-0.2
+0.1
+0.6
-1.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.4
-0.7
-0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
-0.1
+0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.0
-0.0
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
-0.1
+1.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
+0.3
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.0
+0.3
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
-0.4
+0.0
+0.7
+0.3
+0.2
auxotrophy
YNB Glucose
-0.2
-0.1
-0.2
+1.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
+1.0
+0.5
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.4
+0.4
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
+0.3
+1.4
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
-0.6
+2.4
+0.3
growth on ypd
YPD
-0.0
-0.0
-0.4
+2.2
+0.1
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