Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12602 and 12603 are separated by 439 nucleotides12603 and 12604 are separated by 220 nucleotides12604 and 12605 are separated by 674 nucleotides12605 and 12606 are separated by 553 nucleotides mRNA_4234: 12602 - SUPERFAMILY--SSF56112, at 1,679,173 to 1,681,802 12602 mRNA_4235: 12603 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,682,242 to 1,685,142 12603 mRNA_4236: 12604 - HMMPfam-pinin/SDK/memA/ protein conserved region-PF04696, at 1,685,363 to 1,686,839 12604 mRNA_4237: 12605 - K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1, at 1,687,514 to 1,688,995 12605 mRNA_4238: 12606 - KOG1105 Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1, at 1,689,549 to 1,691,062 12606
Group Condition mRNA_4234 mRNA_4235 mRNA_4236 mRNA_4237 mRNA_4238
12602 12603 12604 12605 12606
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 +0.1 -1.1 -1.3 -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 -0.2 -2.0 +0.7 +0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.0 +0.5 -1.1 -1.0 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.5 -0.0 -0.3 -0.0 -0.2
auxotrophy Dropout Complete -0.2 -0.2 -0.7 +0.2 -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.2 -0.2 +0.5 -1.1 +0.0
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 +0.0 -0.3 +0.3 -0.0
growth on oleic acid YNB Glucose -0.2 +0.1 +0.6 -1.1 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.2 +0.4 -0.7 -0.4 +0.3
ypd buoyancy 40 hrs Median Buoyancy +0.2 -0.1 -0.1 +0.0 +0.0
ypd buoyancy 40 hrs High Buoyancy +0.3 -0.0 -0.0 -0.2 -0.0
growth on ricinoleic acid YNB Glucose -0.4 +0.1 -0.1 +1.0 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 -0.1 +0.3 +0.3 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 +0.0 +0.3 +0.3 +0.1
growth on oleic acid YNB Oleic Acid -0.4 +0.0 +0.7 +0.3 +0.2
auxotrophy YNB Glucose -0.2 -0.1 -0.2 +1.1 +0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 +0.1 +1.0 +0.5 -0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.3 +0.4 +0.4 +0.3 +0.2
auxotrophy YNB Glucose 75mM Methionine -0.2 -0.2 +0.3 +1.4 +0.4
auxotrophy YNB Glucose 75mM Arginine -0.0 -0.1 -0.6 +2.4 +0.3
growth on ypd YPD -0.0 -0.0 -0.4 +2.2 +0.1
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