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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12603 and 12604 are separated by 220 nucleotides
12604 and 12605 are separated by 674 nucleotides
12605 and 12606 are separated by 553 nucleotides
12606 and 12607 are separated by 346 nucleotides
mRNA_4235: 12603 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 1,682,242 to 1,685,142
12603
mRNA_4236: 12604 - HMMPfam-pinin/SDK/memA/ protein conserved region-PF04696, at 1,685,363 to 1,686,839
12604
mRNA_4237: 12605 - K15100 SLC25A1, CTP solute carrier family 25 (mitochondrial citrate transporter), member 1, at 1,687,514 to 1,688,995
12605
mRNA_4238: 12606 - KOG1105 Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1, at 1,689,549 to 1,691,062
12606
mRNA_4239: 12607 - Hypothetical Protein, at 1,691,409 to 1,692,539
12607
Group
Condition
mRNA
_4235
mRNA
_4236
mRNA
_4237
mRNA
_4238
mRNA
_4239
12603
12604
12605
12606
12607
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.1
-1.3
-0.4
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-1.1
-1.0
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-2.0
+0.7
+0.1
+0.3
auxotrophy
Dropout Complete
-0.2
-0.7
+0.2
-0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.5
-1.1
+0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.3
-0.0
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
-0.2
-0.0
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.6
-1.1
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.7
-0.4
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.0
+0.0
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.3
+0.3
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
+1.0
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.3
+0.3
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.3
+0.3
+0.1
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.4
+0.3
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
+0.0
+0.7
+0.3
+0.2
-0.1
auxotrophy
YNB Glucose
-0.1
-0.2
+1.1
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+1.0
+0.5
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.6
+2.4
+0.3
+0.2
growth on ypd
YPD
-0.0
-0.4
+2.2
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
+1.4
+0.4
+0.2
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