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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12606 and 12607 are separated by 346 nucleotides
12607 and 12608 are separated by 409 nucleotides
12608 and 12609 are separated by 575 nucleotides
12609 and 12610 are separated by 159 nucleotides
mRNA_4238: 12606 - KOG1105 Transcription elongation factor TFIIS/Cofactor of enhancer-binding protein Sp1, at 1,689,549 to 1,691,062
12606
mRNA_4239: 12607 - Hypothetical Protein, at 1,691,409 to 1,692,539
12607
mRNA_4240: 12608 - KOG1700 Regulatory protein MLP and related LIM proteins, at 1,692,949 to 1,695,625
12608
mRNA_4241: 12609 - Hypothetical Protein, at 1,696,201 to 1,696,797
12609
mRNA_4242: 12610 - K02985 RP-S3e, RPS3 small subunit ribosomal protein S3e, at 1,696,957 to 1,698,115
12610
Group
Condition
mRNA
_4238
mRNA
_4239
mRNA
_4240
mRNA
_4241
mRNA
_4242
12606
12607
12608
12609
12610
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
+0.1
-0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
+0.2
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.2
-0.3
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.0
+0.0
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
+0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.3
+0.1
-0.2
N.D.
auxotrophy
Dropout Complete
-0.1
+0.0
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.5
+0.1
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
+0.1
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
+0.1
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.0
+0.0
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
-0.0
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.2
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
+0.0
+0.6
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.2
+0.1
+0.2
N.D.
auxotrophy
YNB Glucose
+0.4
+0.2
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.7
+0.4
+0.6
N.D.
growth on ypd
YPD
+0.1
+0.2
+0.4
+0.8
N.D.
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