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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12610 and 12611 are separated by 607 nucleotides
12611 and 12612 are separated by 114 nucleotides
12612 and 12613 are separated by 95 nucleotides
12613 and 12614 are separated by 105 nucleotides
mRNA_4242: 12610 - K02985 RP-S3e, RPS3 small subunit ribosomal protein S3e, at 1,696,957 to 1,698,115
12610
mRNA_4243: 12611 - HMMPfam-F-box-like-PF12937, at 1,698,723 to 1,700,079
12611
mRNA_4244: 12612 - Hypothetical Protein, at 1,700,194 to 1,701,109
12612
mRNA_4245: 12613 - Hypothetical Protein, at 1,701,205 to 1,702,275
12613
mRNA_4246: 12614 - KOG1172 Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family), at 1,702,381 to 1,705,218
12614
Group
Condition
mRNA
_4242
mRNA
_4243
mRNA
_4244
mRNA
_4245
mRNA
_4246
12610
12611
12612
12613
12614
growth on ypd
YPD
N.D.
-0.1
-0.3
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
-0.2
+0.3
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
+0.1
-0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.4
+0.4
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.1
+0.2
+0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.1
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
+0.5
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
+0.7
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
+0.3
-0.1
+0.1
auxotrophy
YNB Glucose
N.D.
+0.1
+0.7
-0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.3
+0.1
+0.1
auxotrophy
Dropout Complete
N.D.
+0.3
+0.7
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
+0.7
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.7
+0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.5
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.7
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.7
+0.3
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
+0.3
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
+0.6
+0.0
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.9
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.5
+0.7
+0.1
+0.0
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