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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12613 and 12614 are separated by 105 nucleotides
12614 and 12615 are separated by 147 nucleotides
12615 and 12616 are separated by 170 nucleotides
12616 and 12617 are separated by 617 nucleotides
mRNA_4245: 12613 - Hypothetical Protein, at 1,701,205 to 1,702,275
12613
mRNA_4246: 12614 - KOG1172 Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family), at 1,702,381 to 1,705,218
12614
mRNA_4247: 12615 - KOG3188 Uncharacterized conserved protein, at 1,705,366 to 1,706,539
12615
mRNA_4248: 12616 - K17764 MMM1 maintenance of mitochondrial morphology protein 1, at 1,706,710 to 1,708,657
12616
mRNA_4249: 12617 - K10436 MAPRE microtubule-associated protein, RP/EB family, at 1,709,275 to 1,710,811
12617
Group
Condition
mRNA
_4245
mRNA
_4246
mRNA
_4247
mRNA
_4248
mRNA
_4249
12613
12614
12615
12616
12617
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
-1.5
N.D.
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.1
-1.1
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
-0.0
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.3
-0.6
N.D.
+0.0
auxotrophy
Dropout Complete
-0.3
-0.0
+0.1
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
-0.0
N.D.
+0.0
auxotrophy
YNB Glucose
-0.2
+0.0
+0.1
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
-0.5
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.2
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.0
-0.2
+0.2
N.D.
+0.1
growth on ypd
YPD
-0.3
-0.1
+0.7
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.1
+0.1
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.1
-0.0
-0.3
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.0
+0.2
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
+0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
+0.1
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
+0.2
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
-0.0
N.D.
+0.6
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