Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12617 and 12618 are separated by 212 nucleotides12618 and 12619 are separated by 453 nucleotides12619 and 12620 are separated by 65 nucleotides12620 and 12621 are separated by 619 nucleotides mRNA_4249: 12617 - K10436 MAPRE microtubule-associated protein, RP/EB family, at 1,709,275 to 1,710,811 12617 mRNA_4250: 12618 - K08956 AFG3 AFG3 family protein, at 1,711,024 to 1,714,296 12618 mRNA_4251: 12619 - K07560 dtd, DTD1 D-tyrosyl-tRNA(Tyr) deacylase, at 1,714,750 to 1,715,768 12619 mRNA_4252: 12620 - HMMPfam-Carboxymuconolactone decarboxylase family-PF02627,HMMPfam-Alpha/beta hydrolase family-PF12697,PRINTS-Alpha/beta hydrolase fold signature-PR00111,SUPERFAMILY--SSF53474,SUPERFAMILY--SSF69118, at 1,715,834 to 1,717,453 12620 mRNA_4253: 12621 - BLAST Dimeric alpha-beta barrel [Ceraceosorus bombacis], at 1,718,073 to 1,718,994 12621
Group Condition mRNA_4249 mRNA_4250 mRNA_4251 mRNA_4252 mRNA_4253
12617 12618 12619 12620 12621
facs on lipid accumulation Sorted No BODIPY Gate -0.2 N.D. +0.0 -0.7 N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.0 N.D. +0.0 -0.6 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 N.D. -0.0 -0.3 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 N.D. +0.2 -0.1 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.2 N.D. +0.1 +0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.3 N.D. -0.1 -0.1 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.3 N.D. -0.0 -0.2 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 N.D. -0.1 +0.2 N.D.
growth on oleic acid YNB Glucose +0.5 N.D. -0.1 -0.2 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 N.D. -0.0 +0.0 N.D.
growth on oleic acid YNB Oleic Acid +0.2 N.D. +0.1 -0.2 N.D.
auxotrophy YNB Glucose -0.0 N.D. +0.2 +0.1 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.0 N.D. +0.1 +0.1 N.D.
auxotrophy Dropout Complete -0.0 N.D. -0.1 +0.4 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 N.D. -0.2 +0.3 N.D.
growth on ricinoleic acid YNB Glucose +0.1 N.D. +0.0 +0.3 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.1 N.D. +0.0 +0.3 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 N.D. +0.2 +0.2 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 N.D. +0.3 -0.0 N.D.
growth on ypd YPD -0.0 N.D. +0.6 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.6 N.D. -0.2 +0.6 N.D.
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