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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12618 and 12619 are separated by 453 nucleotides
12619 and 12620 are separated by 65 nucleotides
12620 and 12621 are separated by 619 nucleotides
12621 and 12622 are separated by 232 nucleotides
mRNA_4250: 12618 - K08956 AFG3 AFG3 family protein, at 1,711,024 to 1,714,296
12618
mRNA_4251: 12619 - K07560 dtd, DTD1 D-tyrosyl-tRNA(Tyr) deacylase, at 1,714,750 to 1,715,768
12619
mRNA_4252: 12620 - HMMPfam-Carboxymuconolactone decarboxylase family-PF02627,HMMPfam-Alpha/beta hydrolase family-PF12697,PRINTS-Alpha/beta hydrolase fold signature-PR00111,SUPERFAMILY--SSF53474,SUPERFAMILY--SSF69118, at 1,715,834 to 1,717,453
12620
mRNA_4253: 12621 - BLAST Dimeric alpha-beta barrel [Ceraceosorus bombacis], at 1,718,073 to 1,718,994
12621
mRNA_4254: 12622 - HMMPfam-Lactonase, 7-bladed beta-propeller-PF10282,SUPERFAMILY--SSF75011, at 1,719,227 to 1,720,870
12622
Group
Condition
mRNA
_4250
mRNA
_4251
mRNA
_4252
mRNA
_4253
mRNA
_4254
12618
12619
12620
12621
12622
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.1
N.D.
-1.3
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.2
N.D.
-0.8
auxotrophy
Dropout Complete
N.D.
-0.1
+0.4
N.D.
-1.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.1
N.D.
-0.3
auxotrophy
YNB Glucose
N.D.
+0.2
+0.1
N.D.
-0.8
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.2
N.D.
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.2
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
-0.6
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
-0.7
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
+0.1
N.D.
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.0
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
+0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
+0.0
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.3
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
+0.3
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.6
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.2
N.D.
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
-0.3
N.D.
+1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.2
N.D.
+0.7
growth on ypd
YPD
N.D.
+0.6
+0.1
N.D.
+1.1
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