Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12618 and 12619 are separated by 453 nucleotides12619 and 12620 are separated by 65 nucleotides12620 and 12621 are separated by 619 nucleotides12621 and 12622 are separated by 232 nucleotides mRNA_4250: 12618 - K08956 AFG3 AFG3 family protein, at 1,711,024 to 1,714,296 12618 mRNA_4251: 12619 - K07560 dtd, DTD1 D-tyrosyl-tRNA(Tyr) deacylase, at 1,714,750 to 1,715,768 12619 mRNA_4252: 12620 - HMMPfam-Carboxymuconolactone decarboxylase family-PF02627,HMMPfam-Alpha/beta hydrolase family-PF12697,PRINTS-Alpha/beta hydrolase fold signature-PR00111,SUPERFAMILY--SSF53474,SUPERFAMILY--SSF69118, at 1,715,834 to 1,717,453 12620 mRNA_4253: 12621 - BLAST Dimeric alpha-beta barrel [Ceraceosorus bombacis], at 1,718,073 to 1,718,994 12621 mRNA_4254: 12622 - HMMPfam-Lactonase, 7-bladed beta-propeller-PF10282,SUPERFAMILY--SSF75011, at 1,719,227 to 1,720,870 12622
Group Condition mRNA_4250 mRNA_4251 mRNA_4252 mRNA_4253 mRNA_4254
12618 12619 12620 12621 12622
ypd buoyancy 40 hrs No Buoyancy Separation N.D. +0.2 -0.1 N.D. -1.3
growth on oleic acid YNB Glucose N.D. -0.1 -0.2 N.D. -0.8
auxotrophy Dropout Complete N.D. -0.1 +0.4 N.D. -1.1
ypd buoyancy 40 hrs Low Buoyancy N.D. -0.1 -0.1 N.D. -0.3
auxotrophy YNB Glucose N.D. +0.2 +0.1 N.D. -0.8
growth on oleic acid YNB Oleic Acid N.D. +0.1 -0.2 N.D. -0.5
ypd buoyancy 40 hrs Median Buoyancy N.D. -0.0 -0.2 N.D. -0.2
facs on lipid accumulation Sorted High BODIPY Gate N.D. +0.0 -0.6 N.D. +0.3
facs on lipid accumulation Sorted No BODIPY Gate N.D. +0.0 -0.7 N.D. +0.4
auxotrophy YNB Glucose 75mM Arginine N.D. +0.1 +0.1 N.D. -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. +0.3 -0.0 N.D. -0.5
auxotrophy YNB Glucose 75mM Methionine N.D. +0.1 +0.1 N.D. -0.3
growth on ricinoleic acid YNB Glucose N.D. +0.0 +0.3 N.D. -0.1
growth on ricinoleic acid YNB Ricinoleic Acid N.D. -0.0 +0.0 N.D. +0.4
ypd buoyancy 40 hrs High Buoyancy N.D. +0.0 +0.3 N.D. +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. -0.2 +0.3 N.D. +0.6
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. -0.2 +0.6 N.D. +0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. -0.1 +0.2 N.D. +0.6
facs on lipid accumulation Sorted Low BODIPY Gate N.D. -0.0 -0.3 N.D. +1.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. +0.2 +0.2 N.D. +0.7
growth on ypd YPD N.D. +0.6 +0.1 N.D. +1.1
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