Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12619 and 12620 are separated by 65 nucleotides12620 and 12621 are separated by 619 nucleotides12621 and 12622 are separated by 232 nucleotides12622 and 12623 are separated by 441 nucleotides mRNA_4251: 12619 - K07560 dtd, DTD1 D-tyrosyl-tRNA(Tyr) deacylase, at 1,714,750 to 1,715,768 12619 mRNA_4252: 12620 - HMMPfam-Carboxymuconolactone decarboxylase family-PF02627,HMMPfam-Alpha/beta hydrolase family-PF12697,PRINTS-Alpha/beta hydrolase fold signature-PR00111,SUPERFAMILY--SSF53474,SUPERFAMILY--SSF69118, at 1,715,834 to 1,717,453 12620 mRNA_4253: 12621 - BLAST Dimeric alpha-beta barrel [Ceraceosorus bombacis], at 1,718,073 to 1,718,994 12621 mRNA_4254: 12622 - HMMPfam-Lactonase, 7-bladed beta-propeller-PF10282,SUPERFAMILY--SSF75011, at 1,719,227 to 1,720,870 12622 mRNA_4255: 12623 - HMMPfam-Dioxygenase-PF00775,SUPERFAMILY--SSF49482, at 1,721,312 to 1,723,112 12623
Group Condition mRNA_4251 mRNA_4252 mRNA_4253 mRNA_4254 mRNA_4255
12619 12620 12621 12622 12623
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 -0.1 N.D. -1.3 -0.3
growth on oleic acid YNB Glucose -0.1 -0.2 N.D. -0.8 -0.0
auxotrophy Dropout Complete -0.1 +0.4 N.D. -1.1 +0.1
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.1 N.D. -0.3 -0.1
auxotrophy YNB Glucose +0.2 +0.1 N.D. -0.8 -0.0
growth on oleic acid YNB Oleic Acid +0.1 -0.2 N.D. -0.5 -0.0
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.2 N.D. -0.2 -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.0 -0.7 N.D. +0.4 -0.0
facs on lipid accumulation Sorted High BODIPY Gate +0.0 -0.6 N.D. +0.3 +0.0
auxotrophy YNB Glucose 75mM Arginine +0.1 +0.1 N.D. -0.4 +0.3
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.1 N.D. -0.3 +0.4
ypd buoyancy 40 hrs High Buoyancy +0.0 +0.3 N.D. +0.1 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.0 -0.3 N.D. +1.1 -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 -0.0 N.D. -0.5 +0.6
growth on ricinoleic acid YNB Glucose +0.0 +0.3 N.D. -0.1 +0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 +0.3 N.D. +0.6 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 +0.0 N.D. +0.4 +0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 +0.2 N.D. +0.6 +0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 +0.6 N.D. +0.3 +0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 +0.2 N.D. +0.7 +0.3
growth on ypd YPD +0.6 +0.1 N.D. +1.1 -0.4
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