Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
12619 and 12620 are separated by 65 nucleotides
12620 and 12621 are separated by 619 nucleotides
12621 and 12622 are separated by 232 nucleotides
12622 and 12623 are separated by 441 nucleotides
mRNA_4251: 12619 - K07560 dtd, DTD1 D-tyrosyl-tRNA(Tyr) deacylase, at 1,714,750 to 1,715,768
12619
mRNA_4252: 12620 - HMMPfam-Carboxymuconolactone decarboxylase family-PF02627,HMMPfam-Alpha/beta hydrolase family-PF12697,PRINTS-Alpha/beta hydrolase fold signature-PR00111,SUPERFAMILY--SSF53474,SUPERFAMILY--SSF69118, at 1,715,834 to 1,717,453
12620
mRNA_4253: 12621 - BLAST Dimeric alpha-beta barrel [Ceraceosorus bombacis], at 1,718,073 to 1,718,994
12621
mRNA_4254: 12622 - HMMPfam-Lactonase, 7-bladed beta-propeller-PF10282,SUPERFAMILY--SSF75011, at 1,719,227 to 1,720,870
12622
mRNA_4255: 12623 - HMMPfam-Dioxygenase-PF00775,SUPERFAMILY--SSF49482, at 1,721,312 to 1,723,112
12623
Group
Condition
mRNA
_4251
mRNA
_4252
mRNA
_4253
mRNA
_4254
mRNA
_4255
12619
12620
12621
12622
12623
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
N.D.
-1.3
-0.3
growth on oleic acid
YNB Glucose
-0.1
-0.2
N.D.
-0.8
-0.0
auxotrophy
Dropout Complete
-0.1
+0.4
N.D.
-1.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
N.D.
-0.3
-0.1
auxotrophy
YNB Glucose
+0.2
+0.1
N.D.
-0.8
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
N.D.
-0.5
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
N.D.
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.7
N.D.
+0.4
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.6
N.D.
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
N.D.
-0.4
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
N.D.
-0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.3
N.D.
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.3
N.D.
+1.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.0
N.D.
-0.5
+0.6
growth on ricinoleic acid
YNB Glucose
+0.0
+0.3
N.D.
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.3
N.D.
+0.6
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.0
N.D.
+0.4
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
N.D.
+0.6
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.6
N.D.
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
N.D.
+0.7
+0.3
growth on ypd
YPD
+0.6
+0.1
N.D.
+1.1
-0.4
remove
mRNA_4251
plot
remove
mRNA_4252
plot
remove
mRNA_4253
remove
mRNA_4254
plot
remove
mRNA_4255
plot