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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12620 and 12621 are separated by 619 nucleotides
12621 and 12622 are separated by 232 nucleotides
12622 and 12623 are separated by 441 nucleotides
12623 and 12624 are separated by 477 nucleotides
mRNA_4252: 12620 - HMMPfam-Carboxymuconolactone decarboxylase family-PF02627,HMMPfam-Alpha/beta hydrolase family-PF12697,PRINTS-Alpha/beta hydrolase fold signature-PR00111,SUPERFAMILY--SSF53474,SUPERFAMILY--SSF69118, at 1,715,834 to 1,717,453
12620
mRNA_4253: 12621 - BLAST Dimeric alpha-beta barrel [Ceraceosorus bombacis], at 1,718,073 to 1,718,994
12621
mRNA_4254: 12622 - HMMPfam-Lactonase, 7-bladed beta-propeller-PF10282,SUPERFAMILY--SSF75011, at 1,719,227 to 1,720,870
12622
mRNA_4255: 12623 - HMMPfam-Dioxygenase-PF00775,SUPERFAMILY--SSF49482, at 1,721,312 to 1,723,112
12623
mRNA_4256: 12624 - HMMPfam-Putative serine esterase (DUF676)-PF05057,SUPERFAMILY--SSF53474, at 1,723,590 to 1,725,479
12624
Group
Condition
mRNA
_4252
mRNA
_4253
mRNA
_4254
mRNA
_4255
mRNA
_4256
12620
12621
12622
12623
12624
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-1.3
-0.3
+0.2
growth on oleic acid
YNB Glucose
-0.2
N.D.
-0.8
-0.0
+0.2
auxotrophy
Dropout Complete
+0.4
N.D.
-1.1
+0.1
+0.0
auxotrophy
YNB Glucose
+0.1
N.D.
-0.8
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
-0.2
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
N.D.
+0.3
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
-0.5
-0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
N.D.
+0.4
-0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.3
-0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
+1.1
-0.4
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.1
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.4
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.3
+0.4
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
-0.5
+0.6
+0.4
growth on ypd
YPD
+0.1
N.D.
+1.1
-0.4
-0.3
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
-0.1
+0.5
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
+0.4
+0.5
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.7
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.6
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
+0.6
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
N.D.
+0.3
+0.4
+0.3
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