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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12623 and 12624 are separated by 477 nucleotides
12624 and 12625 are separated by 95 nucleotides
12625 and 12626 are separated by 431 nucleotides
12626 and 12627 are separated by 626 nucleotides
mRNA_4255: 12623 - HMMPfam-Dioxygenase-PF00775,SUPERFAMILY--SSF49482, at 1,721,312 to 1,723,112
12623
mRNA_4256: 12624 - HMMPfam-Putative serine esterase (DUF676)-PF05057,SUPERFAMILY--SSF53474, at 1,723,590 to 1,725,479
12624
mRNA_4257: 12625 - K00295 MTD1 methylenetetrahydrofolate dehydrogenase (NAD+), at 1,725,575 to 1,726,851
12625
mRNA_4258: 12626 - KOG4044 Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily), at 1,727,283 to 1,728,545
12626
mRNA_4259: 12627 - SUPERFAMILY--SSF51445, at 1,729,172 to 1,731,284
12627
Group
Condition
mRNA
_4255
mRNA
_4256
mRNA
_4257
mRNA
_4258
mRNA
_4259
12623
12624
12625
12626
12627
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.5
-0.7
-1.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.1
+0.1
-1.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
-1.3
-0.2
N.D.
growth on ypd
YPD
-0.4
-0.3
-0.2
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.3
-0.6
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.3
-0.6
-0.7
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.4
-0.5
-0.8
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.0
+0.1
-0.4
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
+0.2
-0.1
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
-0.8
+0.2
N.D.
auxotrophy
Dropout Complete
+0.1
+0.0
-0.6
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.5
+0.3
-0.3
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
-0.7
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.3
-0.0
-0.5
N.D.
auxotrophy
YNB Glucose
-0.0
+0.2
-0.5
+0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
-0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.4
-0.3
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.0
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.3
-0.7
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.2
-0.5
+1.1
N.D.
growth on oleic acid
YNB Glucose
-0.0
+0.2
+0.3
+0.2
N.D.
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