Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 12625 and 12626 are separated by 431 nucleotides12626 and 12627 are separated by 626 nucleotides12627 and 12628 are separated by 629 nucleotides12628 and 12629 are separated by 832 nucleotides mRNA_4257: 12625 - K00295 MTD1 methylenetetrahydrofolate dehydrogenase (NAD+), at 1,725,575 to 1,726,851 12625 mRNA_4258: 12626 - KOG4044 Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily), at 1,727,283 to 1,728,545 12626 mRNA_4259: 12627 - SUPERFAMILY--SSF51445, at 1,729,172 to 1,731,284 12627 mRNA_4260: 12628 - K11849 USP25_28, UBP2 ubiquitin carboxyl-terminal hydrolase 25/28, at 1,731,914 to 1,736,985 12628 mRNA_4261: 12629 - HMMPfam-NUDIX domain-PF00293,ProSitePatterns-Nudix box signature.-PS00893,ProSiteProfiles-Nudix hydrolase domain profile.-PS51462,SUPERFAMILY--SSF55811, at 1,737,818 to 1,738,734 12629
Group Condition mRNA_4257 mRNA_4258 mRNA_4259 mRNA_4260 mRNA_4261
12625 12626 12627 12628 12629
facs on lipid accumulation Sorted Low BODIPY Gate -0.7 -1.1 N.D. -0.6 -0.9
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -1.3 -0.2 N.D. -0.3 -1.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.6 -0.7 N.D. +0.1 -1.1
facs on lipid accumulation Sorted High BODIPY Gate +0.1 -1.4 N.D. -0.4 +0.3
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.1 N.D. -0.1 -0.9
ypd buoyancy 40 hrs No Buoyancy Separation -0.5 +1.1 N.D. +0.0 -1.2
auxotrophy YNB Glucose 75mM Arginine -0.8 +0.2 N.D. +0.2 -0.2
growth on oleic acid YNB Oleic Acid -0.1 -0.4 N.D. +0.2 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 -0.5 N.D. +0.4 -0.3
facs on lipid accumulation Sorted No BODIPY Gate +0.1 -0.4 N.D. -0.2 +0.1
growth on ypd YPD -0.2 -0.0 N.D. -0.1 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.5 -0.8 N.D. +0.3 +0.6
ypd buoyancy 40 hrs High Buoyancy -0.6 +0.2 N.D. -0.0 +0.7
auxotrophy YNB Glucose 75mM Methionine -0.7 +0.3 N.D. +0.2 +0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.7 +0.1 N.D. +0.3 +0.4
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 -0.3 N.D. +0.3 +0.6
growth on ricinoleic acid YNB Glucose -0.3 -0.5 N.D. +0.5 +0.7
ypd buoyancy 40 hrs Median Buoyancy +0.0 +0.4 N.D. -0.1 +0.3
auxotrophy Dropout Complete -0.6 +0.3 N.D. +0.3 +0.6
growth on oleic acid YNB Glucose +0.3 +0.2 N.D. +0.1 +0.4
auxotrophy YNB Glucose -0.5 +0.4 N.D. +0.3 +0.9
remove
mRNA_4257
plot
remove
mRNA_4258
plot
remove
mRNA_4259
remove
mRNA_4260
plot
remove
mRNA_4261
plot