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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12627 and 12628 are separated by 629 nucleotides
12628 and 12629 are separated by 832 nucleotides
12629 and 12630 are separated by 165 nucleotides
12630 and 12631 are separated by 164 nucleotides
mRNA_4259: 12627 - SUPERFAMILY--SSF51445, at 1,729,172 to 1,731,284
12627
mRNA_4260: 12628 - K11849 USP25_28, UBP2 ubiquitin carboxyl-terminal hydrolase 25/28, at 1,731,914 to 1,736,985
12628
mRNA_4261: 12629 - HMMPfam-NUDIX domain-PF00293,ProSitePatterns-Nudix box signature.-PS00893,ProSiteProfiles-Nudix hydrolase domain profile.-PS51462,SUPERFAMILY--SSF55811, at 1,737,818 to 1,738,734
12629
mRNA_4262: 12630 - KOG2688 Transcription-associated recombination protein - Thp1p, at 1,738,900 to 1,741,067
12630
mRNA_4263: 12631 - K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic, at 1,741,232 to 1,743,677
12631
Group
Condition
mRNA
_4259
mRNA
_4260
mRNA
_4261
mRNA
_4262
mRNA
_4263
12627
12628
12629
12630
12631
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
-1.2
+0.3
-1.8
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.2
-0.5
-2.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-1.1
-1.4
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
-0.9
-1.3
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
-0.3
-0.3
-1.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
+0.3
-0.8
-0.7
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.4
+0.1
-1.8
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.9
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
-1.3
-0.4
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.4
-0.8
-0.5
growth on ypd
YPD
N.D.
-0.1
-0.1
+0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+0.6
-0.9
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.7
+0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
+0.1
-0.4
+0.8
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.2
+0.4
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
+0.6
-0.5
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.3
+0.2
+0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
+0.4
+0.2
+0.7
auxotrophy
Dropout Complete
N.D.
+0.3
+0.6
+0.4
+0.5
growth on ricinoleic acid
YNB Glucose
N.D.
+0.5
+0.7
+0.2
+0.7
auxotrophy
YNB Glucose
N.D.
+0.3
+0.9
+0.5
+0.7
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