Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 12627 and 12628 are separated by 629 nucleotides12628 and 12629 are separated by 832 nucleotides12629 and 12630 are separated by 165 nucleotides12630 and 12631 are separated by 164 nucleotides mRNA_4259: 12627 - SUPERFAMILY--SSF51445, at 1,729,172 to 1,731,284 12627 mRNA_4260: 12628 - K11849 USP25_28, UBP2 ubiquitin carboxyl-terminal hydrolase 25/28, at 1,731,914 to 1,736,985 12628 mRNA_4261: 12629 - HMMPfam-NUDIX domain-PF00293,ProSitePatterns-Nudix box signature.-PS00893,ProSiteProfiles-Nudix hydrolase domain profile.-PS51462,SUPERFAMILY--SSF55811, at 1,737,818 to 1,738,734 12629 mRNA_4262: 12630 - KOG2688 Transcription-associated recombination protein - Thp1p, at 1,738,900 to 1,741,067 12630 mRNA_4263: 12631 - K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic, at 1,741,232 to 1,743,677 12631
Group Condition mRNA_4259 mRNA_4260 mRNA_4261 mRNA_4262 mRNA_4263
12627 12628 12629 12630 12631
ypd buoyancy 40 hrs No Buoyancy Separation N.D. +0.0 -1.2 +0.3 -1.8
growth on oleic acid YNB Oleic Acid N.D. +0.2 -0.2 -0.5 -2.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. +0.1 -1.1 -1.4 +0.3
facs on lipid accumulation Sorted Low BODIPY Gate N.D. -0.6 -0.9 -1.3 +0.7
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. +0.4 -0.3 -0.3 -1.5
facs on lipid accumulation Sorted High BODIPY Gate N.D. -0.4 +0.3 -0.8 -0.7
growth on oleic acid YNB Glucose N.D. +0.1 +0.4 +0.1 -1.8
ypd buoyancy 40 hrs Low Buoyancy N.D. -0.1 -0.9 -0.2 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. -0.3 -1.3 -0.4 +1.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. +0.3 +0.4 -0.8 -0.5
growth on ypd YPD N.D. -0.1 -0.1 +0.1 -0.4
growth on ricinoleic acid YNB Ricinoleic Acid N.D. +0.3 +0.6 -0.9 -0.4
ypd buoyancy 40 hrs High Buoyancy N.D. -0.0 +0.7 +0.1 -0.6
facs on lipid accumulation Sorted No BODIPY Gate N.D. -0.2 +0.1 -0.4 +0.8
auxotrophy YNB Glucose 75mM Arginine N.D. +0.2 -0.2 +0.4 -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. +0.3 +0.6 -0.5 +0.4
ypd buoyancy 40 hrs Median Buoyancy N.D. -0.1 +0.3 +0.2 +0.6
auxotrophy YNB Glucose 75mM Methionine N.D. +0.2 +0.4 +0.2 +0.7
auxotrophy Dropout Complete N.D. +0.3 +0.6 +0.4 +0.5
growth on ricinoleic acid YNB Glucose N.D. +0.5 +0.7 +0.2 +0.7
auxotrophy YNB Glucose N.D. +0.3 +0.9 +0.5 +0.7
remove
mRNA_4259
plot
remove
mRNA_4260
plot
remove
mRNA_4261
remove
mRNA_4262
plot
remove
mRNA_4263
plot