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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12631 and 12632 are separated by 413 nucleotides
12632 and 12633 are separated by 526 nucleotides
12633 and 12634 are separated by 525 nucleotides
12634 and 12635 are separated by 872 nucleotides
mRNA_4263: 12631 - K10416 DYNC1LI, DNCLI dynein light intermediate chain 1, cytosolic, at 1,741,232 to 1,743,677
12631
mRNA_4264: 12632 - Hypothetical Protein, at 1,744,091 to 1,745,665
12632
mRNA_4265: 12633 - BLAST lytic polysaccharide monooxygenase [Cenococcum geophi..., at 1,746,192 to 1,748,005
12633
mRNA_4266: 12634 - BLAST sucrase/ferredoxin-like domain-containing protein [Rh..., at 1,748,531 to 1,749,378
12634
mRNA_4267: 12635 - K01581 E4.1.1.17, ODC1, speC, speF ornithine decarboxylase, at 1,750,251 to 1,751,902
12635
Group
Condition
mRNA
_4263
mRNA
_4264
mRNA
_4265
mRNA
_4266
mRNA
_4267
12631
12632
12633
12634
12635
ypd buoyancy
40 hrs No Buoyancy Separation
-1.8
+0.2
+0.1
-0.5
N.D.
growth on oleic acid
YNB Glucose
-1.8
+0.4
-0.2
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-2.1
+0.6
+0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.5
+0.3
-0.1
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.3
-0.3
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.1
+0.3
-0.4
N.D.
growth on ypd
YPD
-0.4
+0.2
-0.3
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
-0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.4
-0.0
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.2
+0.2
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
+0.0
-0.7
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.6
-0.2
+0.1
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.8
-0.1
+0.1
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.5
+0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.0
+0.2
+0.0
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.5
+0.1
+0.1
N.D.
auxotrophy
Dropout Complete
+0.5
+0.6
-0.2
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.7
+0.1
+0.1
N.D.
auxotrophy
YNB Glucose
+0.7
+0.5
-0.2
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.7
+0.7
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.7
+0.7
+0.3
+0.4
N.D.
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