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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12633 and 12634 are separated by 525 nucleotides
12634 and 12635 are separated by 872 nucleotides
12635 and 12636 are separated by 883 nucleotides
12636 and 12637 are separated by 989 nucleotides
mRNA_4265: 12633 - BLAST lytic polysaccharide monooxygenase [Cenococcum geophi..., at 1,746,192 to 1,748,005
12633
mRNA_4266: 12634 - BLAST sucrase/ferredoxin-like domain-containing protein [Rh..., at 1,748,531 to 1,749,378
12634
mRNA_4267: 12635 - K01581 E4.1.1.17, ODC1, speC, speF ornithine decarboxylase, at 1,750,251 to 1,751,902
12635
mRNA_4268: 12636 - K02921 RP-L37Ae, RPL37A large subunit ribosomal protein L37Ae, at 1,752,786 to 1,753,388
12636
mRNA_4269: 12637 - K15634 gpmB probable phosphoglycerate mutase, at 1,754,378 to 1,755,256
12637
Group
Condition
mRNA
_4265
mRNA
_4266
mRNA
_4267
mRNA
_4268
mRNA
_4269
12633
12634
12635
12636
12637
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.0
N.D.
N.D.
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.2
N.D.
N.D.
-0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
N.D.
N.D.
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.5
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.3
N.D.
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
N.D.
N.D.
-0.3
growth on oleic acid
YNB Glucose
-0.2
+0.0
N.D.
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
N.D.
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.4
N.D.
N.D.
+0.0
growth on ypd
YPD
-0.3
-0.1
N.D.
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.2
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.1
N.D.
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.3
-0.2
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
N.D.
N.D.
+0.1
auxotrophy
Dropout Complete
-0.2
+0.3
N.D.
N.D.
+0.5
auxotrophy
YNB Glucose
-0.2
+0.3
N.D.
N.D.
+0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.4
N.D.
N.D.
+0.4
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