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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12634 and 12635 are separated by 872 nucleotides
12635 and 12636 are separated by 883 nucleotides
12636 and 12637 are separated by 989 nucleotides
12637 and 12638 are separated by 3112 nucleotides
mRNA_4266: 12634 - BLAST sucrase/ferredoxin-like domain-containing protein [Rh..., at 1,748,531 to 1,749,378
12634
mRNA_4267: 12635 - K01581 E4.1.1.17, ODC1, speC, speF ornithine decarboxylase, at 1,750,251 to 1,751,902
12635
mRNA_4268: 12636 - K02921 RP-L37Ae, RPL37A large subunit ribosomal protein L37Ae, at 1,752,786 to 1,753,388
12636
mRNA_4269: 12637 - K15634 gpmB probable phosphoglycerate mutase, at 1,754,378 to 1,755,256
12637
mRNA_4270: 12638 - Hypothetical Protein, at 1,758,369 to 1,759,007
12638
Group
Condition
mRNA
_4266
mRNA
_4267
mRNA
_4268
mRNA
_4269
mRNA
_4270
12634
12635
12636
12637
12638
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
N.D.
+0.1
-1.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
N.D.
N.D.
-0.8
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
N.D.
-0.3
-0.7
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
N.D.
-0.2
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
N.D.
+0.1
-0.4
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
N.D.
+0.2
-0.5
growth on ypd
YPD
-0.1
N.D.
N.D.
+0.3
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
N.D.
+0.0
+0.2
growth on oleic acid
YNB Glucose
+0.0
N.D.
N.D.
+0.0
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
N.D.
-0.8
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
N.D.
+0.1
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
+0.3
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
N.D.
-0.5
+1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
N.D.
-0.1
+0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
N.D.
-0.0
+1.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
N.D.
+0.2
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
N.D.
+0.1
+1.0
auxotrophy
Dropout Complete
+0.3
N.D.
N.D.
+0.5
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
N.D.
N.D.
+0.4
+0.5
auxotrophy
YNB Glucose
+0.3
N.D.
N.D.
+0.7
+0.4
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