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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12637 and 12638 are separated by 3112 nucleotides
12638 and 12639 are separated by 110 nucleotides
12639 and 12640 are separated by 305 nucleotides
12640 and 12641 are separated by 386 nucleotides
mRNA_4269: 12637 - K15634 gpmB probable phosphoglycerate mutase, at 1,754,378 to 1,755,256
12637
mRNA_4270: 12638 - Hypothetical Protein, at 1,758,369 to 1,759,007
12638
mRNA_4271: 12639 - K01196 AGL glycogen debranching enzyme, at 1,759,118 to 1,764,832
12639
mRNA_4272: 12640 - K02433 gatA, QRSL1 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 1,765,138 to 1,767,269
12640
mRNA_4273: 12641 - BLAST cellular morphogenesis-related protein [Monilioph..., at 1,767,656 to 1,771,232
12641
Group
Condition
mRNA
_4269
mRNA
_4270
mRNA
_4271
mRNA
_4272
mRNA
_4273
12637
12638
12639
12640
12641
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-1.2
-2.2
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-0.2
-0.4
N.D.
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.7
-0.5
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
-0.5
-0.5
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
+0.3
-0.2
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.4
-0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.6
-0.4
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.2
N.D.
-0.5
growth on ypd
YPD
+0.3
-0.7
-0.0
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.7
+0.1
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.0
-0.2
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.0
-0.3
-0.1
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+1.0
-0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.4
+0.7
N.D.
+0.1
auxotrophy
Dropout Complete
+0.5
+0.2
+0.1
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.5
+0.2
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+1.2
+0.2
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.5
+0.1
N.D.
+0.3
auxotrophy
YNB Glucose
+0.7
+0.4
+0.2
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+1.0
+0.2
N.D.
+0.3
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