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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12638 and 12639 are separated by 110 nucleotides
12639 and 12640 are separated by 305 nucleotides
12640 and 12641 are separated by 386 nucleotides
12641 and 12642 are separated by 244 nucleotides
mRNA_4270: 12638 - Hypothetical Protein, at 1,758,369 to 1,759,007
12638
mRNA_4271: 12639 - K01196 AGL glycogen debranching enzyme, at 1,759,118 to 1,764,832
12639
mRNA_4272: 12640 - K02433 gatA, QRSL1 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 1,765,138 to 1,767,269
12640
mRNA_4273: 12641 - BLAST cellular morphogenesis-related protein [Monilioph..., at 1,767,656 to 1,771,232
12641
mRNA_4274: 12642 - K01720 prpD 2-methylcitrate dehydratase, at 1,771,477 to 1,773,946
12642
Group
Condition
mRNA
_4270
mRNA
_4271
mRNA
_4272
mRNA
_4273
mRNA
_4274
12638
12639
12640
12641
12642
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.2
-2.2
N.D.
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
-0.5
-0.5
N.D.
-0.3
-1.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.5
N.D.
+0.3
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.2
N.D.
-0.3
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.3
N.D.
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.4
N.D.
-0.7
+0.6
growth on ypd
YPD
-0.7
-0.0
N.D.
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
N.D.
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.4
N.D.
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
N.D.
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
N.D.
-0.1
+0.2
growth on oleic acid
YNB Glucose
-0.3
-0.1
N.D.
+0.3
+0.2
growth on ricinoleic acid
YNB Glucose
-0.7
+0.1
N.D.
+0.6
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.7
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+1.2
+0.2
N.D.
-0.2
-0.7
auxotrophy
Dropout Complete
+0.2
+0.1
N.D.
+0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+1.0
-0.1
N.D.
-0.2
+0.0
auxotrophy
YNB Glucose
+0.4
+0.2
N.D.
+0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.1
N.D.
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.2
N.D.
-0.0
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+1.0
+0.2
N.D.
+0.3
+0.1
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