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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12640 and 12641 are separated by 386 nucleotides
12641 and 12642 are separated by 244 nucleotides
12642 and 12643 are separated by 242 nucleotides
12643 and 12644 are separated by 365 nucleotides
mRNA_4272: 12640 - K02433 gatA, QRSL1 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 1,765,138 to 1,767,269
12640
mRNA_4273: 12641 - BLAST cellular morphogenesis-related protein [Monilioph..., at 1,767,656 to 1,771,232
12641
mRNA_4274: 12642 - K01720 prpD 2-methylcitrate dehydratase, at 1,771,477 to 1,773,946
12642
mRNA_4275: 12643 - HMMPfam-RhoGEF domain-PF00621,ProSiteProfiles-Dbl homology (DH) domain profile.-PS50010,SUPERFAMILY--SSF48065, at 1,774,189 to 1,777,372
12643
mRNA_4276: 12644 - Hypothetical Protein, at 1,777,738 to 1,779,130
12644
Group
Condition
mRNA
_4272
mRNA
_4273
mRNA
_4274
mRNA
_4275
mRNA
_4276
12640
12641
12642
12643
12644
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
-1.8
+0.3
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.7
-0.6
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-1.1
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.9
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.5
-0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
-0.3
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.5
-0.2
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
-0.2
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.2
-0.1
+0.2
growth on ypd
YPD
N.D.
+0.1
+0.0
-0.0
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.3
+0.2
+0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.0
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
+0.3
+0.3
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.0
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.2
-0.0
+0.4
auxotrophy
YNB Glucose
N.D.
+0.2
+0.4
+0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.7
+0.6
+0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
+0.1
+0.1
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.6
+0.2
+0.0
-0.2
auxotrophy
Dropout Complete
N.D.
+0.0
+0.4
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
+0.7
+0.3
+0.1
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