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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12643 and 12644 are separated by 365 nucleotides
12644 and 12645 are separated by 1947 nucleotides
12645 and 12646 are separated by 729 nucleotides
12646 and 12647 are separated by 190 nucleotides
mRNA_4275: 12643 - HMMPfam-RhoGEF domain-PF00621,ProSiteProfiles-Dbl homology (DH) domain profile.-PS50010,SUPERFAMILY--SSF48065, at 1,774,189 to 1,777,372
12643
mRNA_4276: 12644 - Hypothetical Protein, at 1,777,738 to 1,779,130
12644
mRNA_4277: 12645 - K08773 RALBP1 RalA-binding protein 1, at 1,781,078 to 1,785,287
12645
mRNA_4278: 12646 - HMMPfam-Voltage-dependent anion channel-PF03595, at 1,786,017 to 1,788,218
12646
mRNA_4279: 12647 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,788,409 to 1,790,808
12647
Group
Condition
mRNA
_4275
mRNA
_4276
mRNA
_4277
mRNA
_4278
mRNA
_4279
12643
12644
12645
12646
12647
auxotrophy
YNB Glucose
+0.2
-0.3
-0.7
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.5
-0.6
-0.0
-0.0
growth on oleic acid
YNB Glucose
+0.1
-0.5
-0.4
+0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.1
-0.6
-0.4
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.3
-0.6
-0.1
+0.3
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
-0.4
-0.3
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
-0.4
-0.4
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
-0.5
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
-0.5
-0.1
+0.4
auxotrophy
Dropout Complete
+0.4
+0.1
-0.6
-0.1
-0.0
growth on ypd
YPD
-0.0
+0.1
-0.0
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
-0.3
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
-0.1
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.3
+0.1
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.3
-0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
+0.0
-0.0
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.1
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.4
-0.2
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.1
-0.3
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
-0.1
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.3
-0.2
+0.1
-0.1
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