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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12645 and 12646 are separated by 729 nucleotides
12646 and 12647 are separated by 190 nucleotides
12647 and 12648 are separated by 100 nucleotides
12648 and 12649 are separated by 461 nucleotides
mRNA_4277: 12645 - K08773 RALBP1 RalA-binding protein 1, at 1,781,078 to 1,785,287
12645
mRNA_4278: 12646 - HMMPfam-Voltage-dependent anion channel-PF03595, at 1,786,017 to 1,788,218
12646
mRNA_4279: 12647 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1,788,409 to 1,790,808
12647
mRNA_4280: 12648 - HMMPfam-Actin interacting protein 3-PF03915,SMART-Actin interacting protein 3-SM00806, at 1,790,909 to 1,794,329
12648
mRNA_4281: 12649 - K11778 DHDDS, RER2, SRT1 ditrans,polycis-polyprenyl diphosphate synthase, at 1,794,791 to 1,795,923
12649
Group
Condition
mRNA
_4277
mRNA
_4278
mRNA
_4279
mRNA
_4280
mRNA
_4281
12645
12646
12647
12648
12649
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
-0.3
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
-0.2
+0.5
N.D.
growth on ypd
YPD
-0.0
-0.1
-0.1
+0.0
N.D.
auxotrophy
YNB Glucose
-0.7
-0.2
-0.0
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.1
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
+0.2
-0.3
N.D.
auxotrophy
Dropout Complete
-0.6
-0.1
-0.0
+0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.6
-0.0
-0.0
+0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
+0.3
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
-0.2
+0.5
N.D.
growth on oleic acid
YNB Glucose
-0.4
+0.0
-0.1
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.1
+0.4
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.0
+0.1
+0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.3
+0.2
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.3
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.4
+0.4
+1.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.4
-0.3
+0.2
+1.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
+0.1
-0.1
+1.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.1
+0.3
+1.3
N.D.
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