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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12648 and 12649 are separated by 461 nucleotides
12649 and 12650 are separated by 939 nucleotides
12650 and 12651 are separated by 306 nucleotides
12651 and 12652 are separated by 314 nucleotides
mRNA_4280: 12648 - HMMPfam-Actin interacting protein 3-PF03915,SMART-Actin interacting protein 3-SM00806, at 1,790,909 to 1,794,329
12648
mRNA_4281: 12649 - K11778 DHDDS, RER2, SRT1 ditrans,polycis-polyprenyl diphosphate synthase, at 1,794,791 to 1,795,923
12649
mRNA_4282: 12650 - Hypothetical Protein, at 1,796,863 to 1,797,558
12650
mRNA_4283: 12651 - KOG2383 Predicted ATPase, at 1,797,865 to 1,800,888
12651
mRNA_4284: 12652 - KOG2806 Chitinase, at 1,801,203 to 1,803,513
12652
Group
Condition
mRNA
_4280
mRNA
_4281
mRNA
_4282
mRNA
_4283
mRNA
_4284
12648
12649
12650
12651
12652
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-1.8
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
-0.3
-0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-0.6
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
-0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.1
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.3
+0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
+0.5
-0.1
-0.4
growth on ypd
YPD
+0.0
N.D.
-0.0
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
N.D.
+0.1
-0.2
+0.0
growth on oleic acid
YNB Glucose
+0.5
N.D.
-0.1
-0.0
+0.0
growth on ricinoleic acid
YNB Glucose
+1.1
N.D.
-0.3
-0.1
+0.0
auxotrophy
Dropout Complete
+0.6
N.D.
-0.1
-0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.3
N.D.
-0.3
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
-0.1
-0.1
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.5
N.D.
+0.4
+0.0
-0.1
auxotrophy
YNB Glucose
+0.6
N.D.
-0.1
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
+0.1
-0.0
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.5
N.D.
+0.1
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
N.D.
-0.3
+0.0
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.3
N.D.
-0.2
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+1.1
N.D.
+0.2
+0.0
+0.3
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