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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12649 and 12650 are separated by 939 nucleotides
12650 and 12651 are separated by 306 nucleotides
12651 and 12652 are separated by 314 nucleotides
12652 and 12653 are separated by 63 nucleotides
mRNA_4281: 12649 - K11778 DHDDS, RER2, SRT1 ditrans,polycis-polyprenyl diphosphate synthase, at 1,794,791 to 1,795,923
12649
mRNA_4282: 12650 - Hypothetical Protein, at 1,796,863 to 1,797,558
12650
mRNA_4283: 12651 - KOG2383 Predicted ATPase, at 1,797,865 to 1,800,888
12651
mRNA_4284: 12652 - KOG2806 Chitinase, at 1,801,203 to 1,803,513
12652
mRNA_4285: 12653 - K18162 NDUFAF5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5, at 1,803,577 to 1,805,345
12653
Group
Condition
mRNA
_4281
mRNA
_4282
mRNA
_4283
mRNA
_4284
mRNA
_4285
12649
12650
12651
12652
12653
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.8
-0.0
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
-0.4
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-0.1
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
-0.1
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.6
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.0
-0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.0
+0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.5
-0.1
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-0.2
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.2
+0.0
N.D.
auxotrophy
Dropout Complete
N.D.
-0.1
-0.2
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
+0.1
+0.1
N.D.
growth on ypd
YPD
N.D.
-0.0
-0.1
+0.2
N.D.
auxotrophy
YNB Glucose
N.D.
-0.1
-0.1
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.1
+0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
+0.0
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.3
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
+0.0
+0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+0.1
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
+0.0
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
-0.0
+0.5
N.D.
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