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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12652 and 12653 are separated by 63 nucleotides
12653 and 12654 are separated by 92 nucleotides
12654 and 12655 are separated by 184 nucleotides
12655 and 12656 are separated by 129 nucleotides
mRNA_4284: 12652 - KOG2806 Chitinase, at 1,801,203 to 1,803,513
12652
mRNA_4285: 12653 - K18162 NDUFAF5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5, at 1,803,577 to 1,805,345
12653
mRNA_4286: 12654 - K01288 KEX1 carboxypeptidase D, at 1,805,438 to 1,808,326
12654
mRNA_4287: 12655 - K14559 MPP10 U3 small nucleolar RNA-associated protein MPP10, at 1,808,511 to 1,811,471
12655
mRNA_4288: 12656 - Hypothetical Protein, at 1,811,601 to 1,812,350
12656
Group
Condition
mRNA
_4284
mRNA
_4285
mRNA
_4286
mRNA
_4287
mRNA
_4288
12652
12653
12654
12655
12656
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
-1.8
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-1.5
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
-0.3
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
-0.7
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.2
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
-0.3
N.D.
+0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
+0.7
N.D.
-0.2
growth on ypd
YPD
+0.2
N.D.
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.1
N.D.
+0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.3
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.0
N.D.
+0.0
N.D.
+0.4
auxotrophy
YNB Glucose
+0.4
N.D.
-0.4
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
-0.0
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
-0.3
N.D.
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
N.D.
+0.2
N.D.
-0.1
auxotrophy
Dropout Complete
+0.3
N.D.
+0.2
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.7
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
+0.2
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
N.D.
-0.0
N.D.
+0.6
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