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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12654 and 12655 are separated by 184 nucleotides
12655 and 12656 are separated by 129 nucleotides
12656 and 12657 are separated by 343 nucleotides
12657 and 12658 are separated by 225 nucleotides
mRNA_4286: 12654 - K01288 KEX1 carboxypeptidase D, at 1,805,438 to 1,808,326
12654
mRNA_4287: 12655 - K14559 MPP10 U3 small nucleolar RNA-associated protein MPP10, at 1,808,511 to 1,811,471
12655
mRNA_4288: 12656 - Hypothetical Protein, at 1,811,601 to 1,812,350
12656
mRNA_4289: 12657 - K15445 TRMT10A, TRM10, RG9MTD2 tRNA (guanine9-N1)-methyltransferase, at 1,812,694 to 1,814,089
12657
mRNA_4290: 12658 - Hypothetical Protein, at 1,814,315 to 1,814,636
12658
Group
Condition
mRNA
_4286
mRNA
_4287
mRNA
_4288
mRNA
_4289
mRNA
_4290
12654
12655
12656
12657
12658
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
+0.8
+0.0
-2.7
auxotrophy
YNB Glucose 75mM Methionine
-0.7
N.D.
+0.3
-1.2
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.8
N.D.
-0.3
-0.7
+1.7
facs on lipid accumulation
Sorted No BODIPY Gate
-1.5
N.D.
-0.4
-0.5
+1.6
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
+0.2
-0.8
-0.5
auxotrophy
YNB Glucose
-0.4
N.D.
+0.5
-0.6
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
+0.6
-0.8
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.2
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.1
-0.4
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
+0.8
+0.1
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
-0.1
-0.4
+0.4
auxotrophy
Dropout Complete
+0.2
N.D.
+0.4
-1.1
+0.7
growth on oleic acid
YNB Glucose
+0.0
N.D.
+0.4
-0.3
+0.5
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
+0.6
-0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
N.D.
+0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
+0.1
+0.3
+1.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
N.D.
-0.2
+0.8
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
-0.0
+0.8
+1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
+0.3
+0.1
+2.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
+0.6
+0.2
+1.6
growth on ypd
YPD
-0.1
N.D.
+0.2
+0.1
+2.7
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