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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12657 and 12658 are separated by 225 nucleotides
12658 and 12659 are separated by 734 nucleotides
12659 and 12660 are separated by 995 nucleotides
12660 and 12661 are separated by 1217 nucleotides
mRNA_4289: 12657 - K15445 TRMT10A, TRM10, RG9MTD2 tRNA (guanine9-N1)-methyltransferase, at 1,812,694 to 1,814,089
12657
mRNA_4290: 12658 - Hypothetical Protein, at 1,814,315 to 1,814,636
12658
mRNA_4291: 12659 - Hypothetical Protein, at 1,815,371 to 1,816,823
12659
mRNA_4292: 12660 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 1,817,819 to 1,819,208
12660
mRNA_4293: 12661 - KOG1375 Beta tubulin, at 1,820,426 to 1,822,919
12661
Group
Condition
mRNA
_4289
mRNA
_4290
mRNA
_4291
mRNA
_4292
mRNA
_4293
12657
12658
12659
12660
12661
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-2.7
+0.7
-2.0
N.D.
auxotrophy
YNB Glucose
-0.6
-0.2
-0.4
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.8
+0.2
-0.3
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-1.2
+0.2
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.8
-0.5
-0.0
+0.1
N.D.
auxotrophy
Dropout Complete
-1.1
+0.7
-0.3
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.5
-0.2
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.4
+0.2
-0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+1.7
+0.1
-1.4
N.D.
growth on oleic acid
YNB Glucose
-0.3
+0.5
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.3
-0.2
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
-0.0
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.1
+0.1
+0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+1.6
+0.6
-0.8
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+1.6
-0.7
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.2
-0.1
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+1.2
-0.2
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
+0.1
-0.4
+1.1
N.D.
growth on ypd
YPD
+0.1
+2.7
-0.4
-0.5
N.D.
growth on ricinoleic acid
YNB Glucose
+0.8
+1.0
-0.3
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+2.1
-0.1
+0.3
N.D.
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