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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12658 and 12659 are separated by 734 nucleotides
12659 and 12660 are separated by 995 nucleotides
12660 and 12661 are separated by 1217 nucleotides
12661 and 12662 are separated by 218 nucleotides
mRNA_4290: 12658 - Hypothetical Protein, at 1,814,315 to 1,814,636
12658
mRNA_4291: 12659 - Hypothetical Protein, at 1,815,371 to 1,816,823
12659
mRNA_4292: 12660 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 1,817,819 to 1,819,208
12660
mRNA_4293: 12661 - KOG1375 Beta tubulin, at 1,820,426 to 1,822,919
12661
mRNA_4294: 12662 - K08851 TP53RK, PRPK, BUD32 TP53 regulating kinase and related kinases, at 1,823,138 to 1,824,204
12662
Group
Condition
mRNA
_4290
mRNA
_4291
mRNA
_4292
mRNA
_4293
mRNA
_4294
12658
12659
12660
12661
12662
ypd buoyancy
40 hrs No Buoyancy Separation
-2.7
+0.7
-2.0
N.D.
N.D.
auxotrophy
YNB Glucose
-0.2
-0.4
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.2
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
-0.6
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.0
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.1
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.2
-0.5
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.5
-0.1
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.2
+0.2
N.D.
N.D.
auxotrophy
Dropout Complete
+0.7
-0.3
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.7
+0.1
-1.4
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.6
-0.7
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
+0.7
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.4
+1.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.2
-0.2
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+1.0
-0.3
+0.5
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+1.6
+0.6
-0.8
N.D.
N.D.
growth on ypd
YPD
+2.7
-0.4
-0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+2.1
-0.1
+0.3
N.D.
N.D.
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